Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IR04_RS20675 Genome accession   NZ_CP009042
Coordinates   1000171..1001835 (-) Length   554 a.a.
NCBI ID   WP_000879555.1    Uniprot ID   P0C6Q4
Organism   Vibrio cholerae O1 biovar El Tor strain FJ147     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 995171..1006835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR04_RS20115 - 995889..996289 (-) 401 Protein_856 transposase -
  IR04_RS09680 (IR04_09615) - 996294..997562 (-) 1269 WP_001107728.1 integrase domain-containing protein -
  IR04_RS09685 (IR04_09620) smpB 998164..998649 (-) 486 WP_000162689.1 SsrA-binding protein SmpB -
  IR04_RS09690 (IR04_09625) - 998833..999267 (+) 435 WP_000815876.1 type II toxin-antitoxin system RatA family toxin -
  IR04_RS09695 (IR04_09630) - 999270..999575 (+) 306 WP_001918351.1 RnfH family protein -
  IR04_RS09700 (IR04_09635) bamE 999653..1000012 (-) 360 WP_001160907.1 outer membrane protein assembly factor BamE -
  IR04_RS20675 (IR04_09640) recN 1000171..1001835 (-) 1665 WP_000879555.1 DNA repair protein RecN Machinery gene
  IR04_RS20680 (IR04_09645) nadK 1001965..1002849 (-) 885 WP_000742830.1 NAD(+) kinase -
  IR04_RS09715 (IR04_09650) grpE 1002995..1003597 (+) 603 WP_000064038.1 nucleotide exchange factor GrpE -
  IR04_RS20455 - 1003590..1003703 (-) 114 WP_001889140.1 hypothetical protein -
  IR04_RS09720 (IR04_09655) dnaK 1003861..1005768 (+) 1908 WP_000516147.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61251.93 Da        Isoelectric Point: 5.5765

>NTDB_id=111167 IR04_RS20675 WP_000879555.1 1000171..1001835(-) (recN) [Vibrio cholerae O1 biovar El Tor strain FJ147]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=111167 IR04_RS20675 WP_000879555.1 1000171..1001835(-) (recN) [Vibrio cholerae O1 biovar El Tor strain FJ147]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGTGAAACTGGTGCTGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGTCTCGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCTAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAGCTCAGCATGCTTGATCAATACGCAGGTCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTGGCTCTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
AAAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAACTGACAGCGCTCCC
TTCAATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAATTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTACAGCAAATTGCTCAGCTAGATTGTTCTGATGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACGTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCAGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCGACTCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTTGCACGCTTGC
TCGGAGGCAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0C6Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

36.945

100

0.375
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365

Multiple sequence alignment