Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYG   Type   Machinery gene
Locus tag   HMPREF9319_RS00415 Genome accession   NZ_GL397128
Coordinates   72399..72731 (+) Length   110 a.a.
NCBI ID   WP_003062925.1    Uniprot ID   -
Organism   Streptococcus equinus ATCC 700338     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 67399..77731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS00380 (HMPREF9319_0069) - 68710..69072 (+) 363 WP_003062916.1 DUF1033 family protein -
  HMPREF9319_RS00385 (HMPREF9319_0070) comYA 69143..70084 (+) 942 WP_003062917.1 competence type IV pilus ATPase ComGA Machinery gene
  HMPREF9319_RS00390 (HMPREF9319_0071) comYB 70008..71051 (+) 1044 WP_003062919.1 competence type IV pilus assembly protein ComGB Machinery gene
  HMPREF9319_RS00395 (HMPREF9319_0072) comYC 71051..71344 (+) 294 WP_003062921.1 competence type IV pilus major pilin ComGC Machinery gene
  HMPREF9319_RS00400 (HMPREF9319_0073) comYD 71328..71759 (+) 432 WP_003062922.1 competence type IV pilus minor pilin ComGD Machinery gene
  HMPREF9319_RS00405 (HMPREF9319_0074) comGE 71713..72006 (+) 294 WP_080543606.1 competence type IV pilus minor pilin ComGE -
  HMPREF9319_RS00410 (HMPREF9319_0075) comYF 71990..72427 (+) 438 WP_041974065.1 competence type IV pilus minor pilin ComGF Machinery gene
  HMPREF9319_RS00415 (HMPREF9319_0076) comYG 72399..72731 (+) 333 WP_003062925.1 competence type IV pilus minor pilin ComGG Machinery gene
  HMPREF9319_RS00420 (HMPREF9319_0077) comYH 72786..73757 (+) 972 WP_003062926.1 class I SAM-dependent methyltransferase Machinery gene
  HMPREF9319_RS00425 (HMPREF9319_0078) - 73795..74994 (+) 1200 WP_003062927.1 acetate kinase -
  HMPREF9319_RS00430 (HMPREF9319_0079) - 75155..75355 (+) 201 WP_013851401.1 helix-turn-helix transcriptional regulator -
  HMPREF9319_RS00435 (HMPREF9319_0080) - 75365..75574 (+) 210 WP_003062929.1 hypothetical protein -
  HMPREF9319_RS00440 (HMPREF9319_0081) - 75587..76039 (+) 453 WP_003062930.1 hypothetical protein -
  HMPREF9319_RS00445 (HMPREF9319_0082) - 76051..76689 (+) 639 WP_003062931.1 CPBP family intramembrane glutamic endopeptidase -
  HMPREF9319_RS00450 (HMPREF9319_0083) proC 76733..77503 (-) 771 WP_003062932.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12662.69 Da        Isoelectric Point: 7.1983

>NTDB_id=1111664 HMPREF9319_RS00415 WP_003062925.1 72399..72731(+) (comYG) [Streptococcus equinus ATCC 700338]
MFTLLKRQVKAGILIYALLMAAIFALLLQFYLGRVVAMERQHQAQLSASQAYLMAELTKDLAKEDTGHLTFDQGVTDYNF
QDNRLQVMVKLPNQQEFDYVFQSVQKEKAN

Nucleotide


Download         Length: 333 bp        

>NTDB_id=1111664 HMPREF9319_RS00415 WP_003062925.1 72399..72731(+) (comYG) [Streptococcus equinus ATCC 700338]
TTGTTTACACTTTTGAAACGGCAAGTTAAGGCAGGGATTTTAATCTATGCTTTGCTTATGGCAGCAATTTTTGCCTTGCT
TTTGCAATTTTATCTAGGACGTGTCGTGGCAATGGAGCGACAACACCAAGCGCAGCTATCTGCTAGTCAGGCTTATTTAA
TGGCAGAATTAACAAAAGATTTGGCAAAAGAGGATACTGGTCACCTTACATTTGACCAAGGAGTAACTGACTACAACTTC
CAAGATAATCGATTGCAGGTGATGGTCAAACTGCCTAATCAACAAGAATTTGACTATGTTTTCCAAAGTGTTCAGAAAGA
GAAAGCTAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYG Streptococcus mutans UA140

54.286

95.455

0.518
  comYG Streptococcus mutans UA159

54.286

95.455

0.518
  comGG/cglG Streptococcus mitis NCTC 12261

40.404

90

0.364

Multiple sequence alignment