Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACN076_RS05140 Genome accession   NZ_CP184836
Coordinates   1057757..1059739 (+) Length   660 a.a.
NCBI ID   WP_420789540.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1052757..1064739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS05120 (ACN076_05120) atpD 1053245..1054651 (+) 1407 WP_000094357.1 F0F1 ATP synthase subunit beta -
  ACN076_RS05125 (ACN076_05125) - 1054662..1055081 (+) 420 WP_000068043.1 F0F1 ATP synthase subunit epsilon -
  ACN076_RS05130 (ACN076_05130) - 1055125..1056381 (-) 1257 WP_420789538.1 ISL3 family transposase -
  ACN076_RS05135 (ACN076_05135) - 1056547..1057560 (-) 1014 WP_420789539.1 lactonase family protein -
  ACN076_RS05140 (ACN076_05140) amiA3 1057757..1059739 (+) 1983 WP_420789540.1 peptide ABC transporter substrate-binding protein Regulator
  ACN076_RS05145 (ACN076_05145) - 1059857..1061023 (+) 1167 WP_203180453.1 AI-2E family transporter -
  ACN076_RS05150 (ACN076_05150) - 1061013..1062242 (+) 1230 WP_293958005.1 tetratricopeptide repeat protein -
  ACN076_RS05155 (ACN076_05155) - 1062395..1063075 (+) 681 WP_153192433.1 MgtC/SapB family protein -
  ACN076_RS05160 (ACN076_05160) gla 1063338..1064207 (+) 870 WP_049491488.1 aquaglyceroporin Gla -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72833.11 Da        Isoelectric Point: 4.8723

>NTDB_id=1111454 ACN076_RS05140 WP_420789540.1 1057757..1059739(+) (amiA3) [Streptococcus sp. K0074]
MKKRVFLAAGVAVLSAAVLVACSSGNGNKEATKPVTYAYVFSSDPSTLDYTVSGNVSTKQVTGNVIDGLLENDQYGNLVP
SVAEDWTVSKDGLTYTYKIRQGIKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQDSIKGLDDYVNGKTTDFSSV
GVKATDDYTVVYTLNHPESFWNSKTTMGVLAPVNEDFLASKGDDFGKPTDITSILYNGPYLLKGLTSKSSIEMTKNQNYW
DKQNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGQQRGGVFYISTNIDRVNYNHTA
KTSDTEKTSTKKALLNKDFRQALAFAVDRKAGISQVFGDEVGPRKLRTSFTPPTFVQVGDQTFGQVTKTELDKLDNVWKD
VSLDDAQDSLHNVDKAKAKFEAAKKTLQADGVQFPIHLDLPISSSNPDFIRQVQSYKQSIEEALGSDNVVVDIQQVSDDE
LGSMTTLATSNANTDWDINAVSGWTPDFADPSTYLDVFDPTSGPSLLSALGVAPGTDNPVIKTVGLDKYKELIDDANSEK
TDLQKRYSKYSKAQAWLSDSALVIPVYSDGAQMLVTKMLPGSGAGGWVGDKTSENSYKYLKIQDKIVTTKEMDEFRKKFA
DEKAKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1111454 ACN076_RS05140 WP_420789540.1 1057757..1059739(+) (amiA3) [Streptococcus sp. K0074]
ATGAAAAAACGTGTTTTCTTAGCAGCAGGAGTTGCTGTACTCTCGGCAGCAGTGCTAGTAGCGTGTTCATCTGGTAATGG
TAATAAAGAAGCAACTAAACCAGTTACTTATGCCTATGTATTCTCATCAGATCCTTCGACTCTGGATTATACAGTTTCTG
GAAATGTCAGCACTAAACAGGTCACAGGTAACGTTATTGACGGTTTGCTTGAAAATGACCAATATGGGAATCTTGTTCCA
TCAGTTGCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACCTATACCTATAAAATCCGTCAGGGTATCAAATGGTATAC
CAATGAGGGGGAAGAGTATGGTGAAGTCAAGGCTCAAGACTTTGTGACTGGTCTGAAACACGCAGCAGATAAGAAATCAC
AGGCTCTTTATCTCGTACAGGATTCTATCAAAGGATTGGATGACTATGTAAATGGGAAAACAACAGATTTTTCTAGTGTT
GGGGTAAAAGCAACTGACGATTATACTGTTGTTTATACTTTGAACCATCCAGAATCTTTCTGGAATTCAAAAACAACAAT
GGGAGTCCTTGCACCAGTAAATGAAGACTTTTTAGCTTCTAAAGGAGATGACTTTGGTAAACCAACTGATATAACGAGCA
TTCTATACAATGGGCCATATCTCCTCAAAGGTCTTACATCTAAGTCTTCTATCGAAATGACCAAAAATCAAAACTACTGG
GATAAACAAAATGTCTTTATTGATGATATCAAGTTATCCTTCTTTGATGGTCAAGATGCAGACTCTCTAGGTCGCGGTTT
TGATGAGGGACATTATCCAGCTGCTCCACTCTTTAAAAACTCTGCCAACTATGAACGTCTAAAAGAAAAGTACAAGGATA
ATATTGTATATGGTCAACAGCGTGGAGGAGTTTTTTATATCTCAACCAATATCGACCGTGTAAATTACAATCACACTGCT
AAAACAAGTGATACAGAAAAAACTTCTACTAAGAAAGCCTTGTTAAACAAAGATTTCCGTCAAGCCTTGGCTTTTGCGGT
AGATCGTAAAGCAGGGATCTCTCAAGTATTTGGTGACGAAGTAGGACCTCGTAAGTTACGGACAAGTTTCACTCCTCCAA
CATTTGTTCAAGTAGGAGATCAAACATTTGGTCAAGTTACTAAGACAGAATTGGATAAATTGGATAATGTCTGGAAAGAT
GTTAGTCTTGATGATGCCCAAGATTCACTTCATAATGTAGACAAGGCTAAAGCTAAGTTTGAAGCTGCTAAGAAAACCCT
TCAAGCTGATGGAGTACAGTTCCCAATTCATTTAGATTTGCCAATTTCTTCATCAAATCCAGATTTTATTCGTCAGGTTC
AGTCTTATAAACAATCCATTGAGGAAGCCTTAGGCTCTGACAATGTAGTTGTTGATATTCAACAAGTTTCTGATGACGAA
TTGGGAAGTATGACTACTCTAGCTACTTCCAATGCAAATACTGACTGGGATATTAATGCAGTCAGTGGTTGGACTCCAGA
CTTTGCAGATCCATCGACTTATCTAGATGTATTTGATCCAACTTCAGGTCCAAGTCTCCTAAGTGCTCTTGGTGTGGCAC
CAGGAACAGACAATCCAGTTATTAAAACAGTTGGATTGGATAAATACAAAGAACTGATTGATGATGCAAATAGTGAGAAA
ACAGACCTTCAAAAACGTTATTCCAAATATTCTAAGGCCCAAGCTTGGTTGTCAGATAGTGCACTTGTTATTCCAGTATA
CTCTGATGGTGCTCAAATGCTAGTGACGAAAATGCTTCCTGGCAGTGGTGCCGGTGGCTGGGTAGGTGACAAGACTAGTG
AAAATAGCTACAAGTATCTGAAAATCCAAGATAAGATTGTCACTACTAAAGAAATGGATGAGTTCCGCAAGAAATTTGCT
GATGAAAAAGCCAAATCCAATGCTGATTATCAGAAGAACTTAGACCGTCATATTCAAGACTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

55.287

100

0.555
  amiA3 Streptococcus thermophilus LMG 18311

54.532

100

0.547
  amiA Streptococcus salivarius strain HSISS4

54.463

100

0.545

Multiple sequence alignment