Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACN076_RS02935 Genome accession   NZ_CP184836
Coordinates   588303..590261 (+) Length   652 a.a.
NCBI ID   WP_420790090.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 583303..595261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS02920 (ACN076_02920) - 584286..584768 (-) 483 WP_000032562.1 S-ribosylhomocysteine lyase -
  ACN076_RS02925 (ACN076_02925) - 584863..586347 (-) 1485 WP_261048397.1 DUF1846 domain-containing protein -
  ACN076_RS02930 (ACN076_02930) - 586500..588107 (+) 1608 WP_420790089.1 glycoside hydrolase family 13 protein -
  ACN076_RS02935 (ACN076_02935) amiA3 588303..590261 (+) 1959 WP_420790090.1 peptide ABC transporter substrate-binding protein Regulator
  ACN076_RS02940 (ACN076_02940) - 590691..591710 (+) 1020 WP_420790091.1 hypothetical protein -
  ACN076_RS02945 (ACN076_02945) tnpA 591960..592412 (+) 453 WP_061758843.1 IS200/IS605 family transposase -
  ACN076_RS02950 (ACN076_02950) - 592477..593922 (+) 1446 WP_420790092.1 LCP family protein -
  ACN076_RS02955 (ACN076_02955) cps4B 593924..594655 (+) 732 WP_261038749.1 capsular polysaccharide biosynthesis protein Cps4B -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72494.49 Da        Isoelectric Point: 4.9243

>NTDB_id=1111439 ACN076_RS02935 WP_420790090.1 588303..590261(+) (amiA3) [Streptococcus sp. K0074]
MNTKKRVLGAGLTFAATLLLAACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTAIITNLVDGLLENDNHGNLVPSLAE
DWSVSSDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKVGVKA
IDDQTVEYTLSRPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRKAYNHTSKTTDE
QKKSTETAVLNKNFRQAVNFALDRAAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWSGINLAD
AQDAYFNKEKAQAKFAEAKKELASQGVTFPIHLDVAVDQTSKNAVTGMNSVKQTLESVLGADNIVIDVQQLSTDDFNNVA
FLAPTPADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAQEDKAKIASLGLDTYTKMLKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTTKQYEEAKTKWEQESKKAI
EKAQKEAENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1111439 ACN076_RS02935 WP_420790090.1 588303..590261(+) (amiA3) [Streptococcus sp. K0074]
ATGAATACAAAAAAGCGTGTACTTGGCGCAGGCCTGACTTTTGCGGCTACCTTGCTTTTAGCTGCTTGCGGACAATCTGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAATCCAACTACATTTAACTATTTATTAGACTACTACGCTGATA
ATACAGCTATTATTACCAACCTAGTTGATGGTTTGCTTGAAAATGACAATCATGGAAACCTAGTTCCATCTTTGGCAGAA
GACTGGTCTGTTTCAAGCGACGGTCTGACTTATACCTATAAACTGAGAAAAGATGCCAAATGGTTCACGGCTGACGGTGA
AGAGTACGCCCCAGTTAAGGCACAGGATTTTGTGACAGGGATAAAGTACGCAGTGGACAATAAATCACAGGCCATTGACT
TGATTCAAAATTCGATCAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGACTTTTCTAAGGTTGGGGTGAAGGCA
ATCGACGACCAGACTGTTGAGTATACTTTGTCACGCCCAGAACCTTACTGGAACTCAAAAACAACCAACAGTATTCTTTT
CCCGGTAAATGAAGAGTTTTTAAACTCAAAAGGGAAAGATTTTGGTACTCTATCTCCAGATAGCATTCTTTACAGTGGAC
CTTATTTGTTAAAAGATTTCACATCAAAATCATCGATCGAGTATGTGAAAAATCCGCATTACTATGATCATGACAAAGTA
TCAATTGAACACGTGAAATTGGCTTATTTTGATGGTTCAGACCAAGAATTGACTATCCGTAACTTTGAAAGTGGAGCCTA
TTCAATCGCTGGGGTTTATCCAAATAGTTCTAACTTTGCTAAGACCAAGGAAAAATATAAGGATAATATCGTTTATAGCT
TGCAGGACAAGACTTCTTGGTACTTCAATTTCAACGTTAACCGTAAGGCTTACAACCATACGTCTAAAACGACAGATGAG
CAGAAAAAATCAACTGAGACAGCTGTCTTGAACAAGAACTTCCGTCAAGCGGTGAACTTTGCCTTGGATCGTGCAGCTTA
TTCTGCCCAGTCAAATGGGGAAGAAGCAGCTAGTAAGACCCTTCGTAACACCCTAGTACCTCCTACATTTGTCCAAGTGG
GAGACAAGACCTTTGGAGAAGTAGTTGCTTCTAAATTGGTCAACTATGGCACAGAATGGTCAGGTATTAACTTGGCAGAT
GCTCAGGATGCCTACTTTAACAAAGAAAAAGCCCAAGCAAAATTTGCGGAAGCTAAAAAAGAATTGGCAAGTCAAGGTGT
GACTTTCCCTATTCACTTGGATGTTGCAGTTGATCAGACAAGTAAAAATGCCGTGACAGGCATGAACTCTGTTAAACAGA
CTCTTGAGTCAGTCTTGGGTGCTGATAACATTGTTATTGATGTTCAACAACTTTCAACAGATGATTTTAATAATGTAGCC
TTTTTAGCGCCAACACCAGCTGATCGTGACTATGATTTGAACTTTGATGGTTGGGTAGGTGACTACCAAGATCCGTCAAC
TTATCTTAATCCTTTCAATGCAGAGGATGGATTCTATCTCAAAATCTTTGGTCTAGATGCTCAAGAAGATAAAGCTAAGA
TTGCTAGCTTGGGTCTAGATACTTACACCAAGATGCTCAAAGATGCAGATAGCGAAAATAAAGATGTAGCCAAACGCTAT
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCCATGTCAAGTGGTGGTACAGCATC
TGTAACCAAAGTAACGCCATTTACAAGAGGCTATTCACTGGTCGGTATCAAGGGTGACGGCAATAACTACAAGTACATGA
AACTGCAAAAAGATACTGTGACAACCAAACAGTATGAAGAAGCTAAGACCAAATGGGAGCAAGAAAGCAAAAAAGCAATC
GAAAAAGCTCAAAAAGAAGCAGAAAATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.533

100

0.509
  amiA3 Streptococcus thermophilus LMG 18311

50.076

100

0.505
  amiA Streptococcus salivarius strain HSISS4

50

100

0.503

Multiple sequence alignment