Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACOB85_RS17430 Genome accession   NZ_CP184834
Coordinates   2106785..2109040 (-) Length   751 a.a.
NCBI ID   WP_225466332.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HoVa25     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101785..2114040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOB85_RS17410 (ACOB85_17410) kdsB 2103077..2103832 (-) 756 WP_005378450.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACOB85_RS17415 (ACOB85_17415) - 2103832..2104011 (-) 180 WP_005378451.1 Trm112 family protein -
  ACOB85_RS17420 (ACOB85_17420) lpxK 2103992..2104999 (-) 1008 WP_054729263.1 tetraacyldisaccharide 4'-kinase -
  ACOB85_RS17425 (ACOB85_17425) msbA 2105005..2106753 (-) 1749 WP_420788246.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACOB85_RS17430 (ACOB85_17430) comEC 2106785..2109040 (-) 2256 WP_225466332.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACOB85_RS17435 (ACOB85_17435) - 2109049..2109558 (+) 510 WP_005387834.1 DUF2062 domain-containing protein -
  ACOB85_RS17440 (ACOB85_17440) lolE 2109708..2110952 (-) 1245 WP_256902822.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACOB85_RS17445 (ACOB85_17445) lolD 2110955..2111662 (-) 708 WP_005378457.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACOB85_RS17450 (ACOB85_17450) lolC 2111655..2112863 (-) 1209 WP_031778997.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACOB85_RS17455 (ACOB85_17455) - 2113113..2113682 (+) 570 WP_420788247.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84304.27 Da        Isoelectric Point: 8.7238

>NTDB_id=1111392 ACOB85_RS17430 WP_225466332.1 2106785..2109040(-) (comEC) [Vibrio alginolyticus strain HoVa25]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVAIEAVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSISLKPITGLRNEAGFDAEKHAM
GKNTIARAVVNKDAKWIVRSNVSLRQSIIADVADDVSSLHHFSLISALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGTVRYLLPQYQLLPSLYGLIFAVAYAWLADFSLPTTRAVSVCVVYVLLKYTLVHWTSWRVLLLAVSLQL
LVQPFASYSMSFWLSYLSACAVLFAINLIRHQRGGWKARLKALLLTQLMLSALIVPVSGHFFSGFSLSSIAYNLVFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWHLVDWSLQPLSTSIQYAIGSWQPISMEMTMLVMAIVVCLIFQRFMSQYAWYLLL
GIVISIKLASEYEPHWRIDVLDVGHGLAVVVEKDDKVLLYDTGKAWQSGSIAEQVVTPVLHQRGYESIDTLILSHSDNDH
AGGRFFIEDAFSPQRKLSSQFFIGYEPCTRGDQWKWQGLKMEVLWPPALVQRAYNPHSCVLRLTDPISNFSMLFTGDIEA
ISEWILLREPGKLQSDVMLVPHHGSKSSSNPRFIEAVSPSVAVASLAKNNRWGMPAENVVASYRKLGITWLDTGEGGQVS
FFIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=1111392 ACOB85_RS17430 WP_225466332.1 2106785..2109040(-) (comEC) [Vibrio alginolyticus strain HoVa25]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATCTCGTCGGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGTTATGAAGGTATTGTCGCGATAGAAGC
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCATCTCGTTAAAGCCGATTACAGGTCTACGCAACGAAGCTGGCTTTGATGCTGAAAAGCACGCGATG
GGTAAAAATACTATCGCCCGAGCGGTTGTTAACAAAGACGCTAAGTGGATTGTTCGTTCTAATGTATCTCTGCGTCAATC
CATTATTGCCGATGTCGCTGATGATGTGTCTTCCCTTCATCATTTCTCGTTAATAAGTGCGTTAGTTTTTGCTGACCGTT
CTTGGTTGTCTAAGGAAGATTGGCAAGCGCTCAGGGACAGTGGTTTACTGCATTTGGTCTCCATTTCTGGTTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTCGTGGGCGGTACCGTTCGTTATCTATTACCCCAATACCAGTTGTTACCTAGCTT
ATATGGGCTGATCTTCGCTGTTGCCTACGCTTGGTTAGCGGATTTCTCTCTGCCTACTACGCGAGCAGTGTCGGTATGCG
TTGTTTACGTTCTCCTGAAGTATACTCTAGTGCACTGGACTTCTTGGCGAGTTCTTTTGCTTGCAGTATCTCTACAACTG
CTTGTCCAACCTTTTGCATCCTACAGTATGAGCTTTTGGTTATCATACCTCTCCGCTTGTGCGGTATTGTTCGCAATTAA
TTTGATTCGACATCAAAGGGGAGGTTGGAAAGCGCGATTAAAAGCGTTATTGCTTACTCAATTGATGTTGAGCGCTTTAA
TCGTACCTGTTAGTGGCCATTTCTTCTCCGGTTTTAGTTTGTCCTCAATAGCCTACAACTTGGTATTTATTCCTTGGTTC
GGATTTATCGTTGTACCTTTGATGTTTCTAGCCCTGTTCTCATCTTTGTTTCTTGAAATGATAGCGAAGCCTCTGTGGCA
TTTGGTGGACTGGTCATTACAGCCATTGAGCACGTCAATACAGTACGCAATAGGTTCTTGGCAACCTATTAGCATGGAAA
TGACAATGCTGGTTATGGCGATAGTGGTTTGCTTAATATTTCAACGGTTCATGTCTCAGTACGCGTGGTATTTGTTACTC
GGCATCGTTATTAGTATCAAGCTTGCATCGGAGTATGAACCGCATTGGCGTATCGATGTATTAGATGTAGGTCATGGCCT
TGCAGTGGTTGTAGAAAAAGACGACAAGGTGTTGCTGTATGACACTGGTAAAGCATGGCAAAGCGGCAGTATCGCAGAGC
AGGTCGTCACTCCGGTTTTGCATCAACGAGGTTATGAAAGCATAGATACACTGATTCTAAGCCATTCCGATAATGATCAC
GCAGGCGGCCGCTTTTTCATTGAAGATGCCTTTTCTCCACAGCGTAAACTTAGTAGTCAATTCTTTATCGGATATGAGCC
TTGCACTAGAGGCGACCAATGGAAATGGCAAGGATTAAAGATGGAAGTACTCTGGCCTCCTGCACTTGTTCAACGTGCGT
ATAATCCGCACTCCTGTGTATTACGACTTACTGACCCTATTTCTAACTTTAGTATGCTTTTTACTGGTGATATTGAGGCC
ATTAGCGAGTGGATTTTGCTTAGAGAACCCGGAAAGTTACAAAGTGATGTGATGCTAGTCCCTCACCACGGGAGTAAAAG
TTCATCGAATCCTCGATTTATTGAGGCGGTGAGCCCGAGTGTGGCGGTTGCTTCTTTAGCAAAAAACAATCGATGGGGAA
TGCCAGCGGAAAATGTCGTTGCTTCATACAGAAAACTTGGCATTACTTGGCTTGATACTGGTGAGGGTGGTCAGGTAAGC
TTCTTTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-684)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

69.149

100

0.692
  comEC Vibrio campbellii strain DS40M4

65.691

100

0.658
  comEC Vibrio cholerae strain A1552

43.501

100

0.437

Multiple sequence alignment