Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACNR9V_RS06240 Genome accession   NZ_CP184786
Coordinates   1179285..1179581 (+) Length   98 a.a.
NCBI ID   WP_125009484.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius strain W-36     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1174285..1184581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR9V_RS06215 (ACNR9V_06215) - 1174657..1175790 (+) 1134 WP_013400389.1 class I SAM-dependent methyltransferase -
  ACNR9V_RS06220 (ACNR9V_06220) - 1175841..1176083 (-) 243 WP_003249178.1 DUF2626 family protein -
  ACNR9V_RS06225 (ACNR9V_06225) - 1176284..1176982 (-) 699 WP_125009481.1 helix-turn-helix transcriptional regulator -
  ACNR9V_RS06230 (ACNR9V_06230) comGA 1177184..1178248 (+) 1065 WP_420768886.1 competence type IV pilus ATPase ComGA Machinery gene
  ACNR9V_RS06235 (ACNR9V_06235) comGB 1178241..1179272 (+) 1032 WP_125009483.1 competence type IV pilus assembly protein ComGB -
  ACNR9V_RS06240 (ACNR9V_06240) comGC 1179285..1179581 (+) 297 WP_125009484.1 competence type IV pilus major pilin ComGC Machinery gene
  ACNR9V_RS06245 (ACNR9V_06245) comGD 1179565..1180008 (+) 444 WP_003249186.1 competence type IV pilus minor pilin ComGD -
  ACNR9V_RS06250 (ACNR9V_06250) comGE 1179992..1180315 (+) 324 WP_125009485.1 competence type IV pilus minor pilin ComGE -
  ACNR9V_RS06255 (ACNR9V_06255) comGF 1180312..1180737 (+) 426 WP_125009486.1 competence type IV pilus minor pilin ComGF -
  ACNR9V_RS06260 (ACNR9V_06260) comGG 1180754..1181143 (+) 390 WP_125009487.1 competence type IV pilus minor pilin ComGG -
  ACNR9V_RS06265 (ACNR9V_06265) - 1181210..1181344 (+) 135 WP_420768887.1 hypothetical protein -
  ACNR9V_RS06270 (ACNR9V_06270) - 1181411..1181590 (+) 180 WP_003249195.1 YqzE family protein -
  ACNR9V_RS06275 (ACNR9V_06275) - 1181648..1182439 (-) 792 WP_125009488.1 YqhG family protein -
  ACNR9V_RS06280 (ACNR9V_06280) - 1182426..1184093 (-) 1668 WP_420768888.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10888.74 Da        Isoelectric Point: 5.6720

>NTDB_id=1111291 ACNR9V_RS06240 WP_125009484.1 1179285..1179581(+) (comGC) [Parageobacillus thermoglucosidasius strain W-36]
MDEKAFTLIEMLIVLMVISVLLLIVIPNITKHNGMINNKGCEAFVNTVQAQVKAYEMEHNKIPTIQELINEKYIKSAQCP
NGRKIQISSDGEVSESGA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1111291 ACNR9V_RS06240 WP_125009484.1 1179285..1179581(+) (comGC) [Parageobacillus thermoglucosidasius strain W-36]
ATGGATGAAAAAGCGTTCACATTGATTGAAATGTTAATCGTGCTAATGGTTATTTCTGTTTTATTGCTTATCGTCATTCC
GAATATCACGAAACATAATGGAATGATTAATAATAAAGGCTGCGAAGCGTTCGTAAACACCGTGCAAGCTCAAGTAAAGG
CATATGAAATGGAACATAACAAAATTCCGACGATACAGGAGCTCATTAACGAAAAGTATATTAAGTCCGCTCAGTGCCCA
AACGGACGTAAAATTCAAATCAGCAGCGACGGGGAAGTAAGTGAAAGCGGTGCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.737

96.939

0.531
  comGC Staphylococcus aureus MW2

48.387

94.898

0.459
  comGC Staphylococcus aureus N315

48.387

94.898

0.459

Multiple sequence alignment