Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACODT9_RS16045 Genome accession   NZ_CP184747
Coordinates   3813614..3814951 (+) Length   445 a.a.
NCBI ID   WP_014149715.1    Uniprot ID   G4T4E7
Organism   Methylotuvimicrobium alcaliphilum strain 20ZK     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3808614..3819951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACODT9_RS16030 (ACODT9_16030) sucD 3809334..3810203 (-) 870 WP_014149712.1 succinate--CoA ligase subunit alpha -
  ACODT9_RS16035 (ACODT9_16035) sucC 3810200..3811366 (-) 1167 WP_014149713.1 ADP-forming succinate--CoA ligase subunit beta -
  ACODT9_RS16040 (ACODT9_16040) - 3811986..3813617 (+) 1632 WP_014149714.1 sensor histidine kinase -
  ACODT9_RS16045 (ACODT9_16045) pilR 3813614..3814951 (+) 1338 WP_014149715.1 sigma-54-dependent transcriptional regulator Regulator
  ACODT9_RS16050 (ACODT9_16050) - 3815202..3815651 (-) 450 WP_014149716.1 hypothetical protein -
  ACODT9_RS16055 (ACODT9_16055) - 3815979..3817199 (-) 1221 WP_014149717.1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase -
  ACODT9_RS16060 (ACODT9_16060) ubiH 3817205..3818416 (-) 1212 WP_014149718.1 2-octaprenyl-6-methoxyphenyl hydroxylase -
  ACODT9_RS16065 (ACODT9_16065) pepP 3818416..3819726 (-) 1311 WP_014149719.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49343.51 Da        Isoelectric Point: 6.1488

>NTDB_id=1111120 ACODT9_RS16045 WP_014149715.1 3813614..3814951(+) (pilR) [Methylotuvimicrobium alcaliphilum strain 20ZK]
MKHPLTLVVDDEPDIRELLSITLKRMNIDTLCAENVDSARQLLQQHPFDLCLTDMKLPDGNGLELVEYLQSTGSTIPIAV
ITAHGNMDTAIKAMKAGAFDFISKPVDLPVLRQIVTKALQLAPDADTKERRTRHILLGESEPMRQVRSKIDKLARSQAPV
YISGESGSGKELVARLIHQQSPRSDKPFVAVNCGAIPPELMESEFFGHKKGSFSGAIADKKGLFQAAEGGTLFLDEVADL
PPSLQVKLLRAIQEKKVRAVGEQHETPVDVRILSATHKDLNQLVQEGVFRQDLYYRINVIDLNIPPLRERGNDIAQLAEH
ILASLNSNNAFQVRLSQSALTALKHYHFPGNVRELENILERAVALSDGKTIDADDLNLPINPEIVPDAPAFDPSKASLED
YLEDIERTAITIALENNRWNKTAAAKELGLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1111120 ACODT9_RS16045 WP_014149715.1 3813614..3814951(+) (pilR) [Methylotuvimicrobium alcaliphilum strain 20ZK]
ATGAAACACCCCTTGACTTTAGTCGTCGACGACGAGCCGGATATCCGAGAGCTGTTAAGCATTACGCTCAAACGCATGAA
CATCGACACCTTGTGCGCGGAAAATGTCGACTCGGCTCGGCAGTTGTTACAACAACATCCGTTCGATCTTTGCCTGACCG
ACATGAAGCTACCCGACGGCAACGGGCTCGAATTGGTCGAATACCTCCAAAGCACGGGCAGCACGATTCCGATTGCCGTA
ATTACCGCACACGGCAACATGGATACTGCGATCAAGGCAATGAAAGCCGGGGCCTTCGACTTTATCTCAAAACCGGTCGA
TTTACCGGTACTTCGGCAAATCGTCACGAAAGCCTTACAACTAGCCCCCGATGCCGATACCAAGGAAAGGCGCACACGAC
ATATTTTATTGGGCGAATCGGAGCCGATGCGCCAAGTCCGGTCTAAAATCGACAAGCTGGCACGTAGTCAGGCGCCTGTT
TATATCAGCGGCGAATCGGGGTCGGGTAAGGAATTGGTGGCGCGCTTGATTCATCAACAAAGCCCGCGTAGCGACAAGCC
TTTTGTTGCCGTAAACTGCGGCGCGATCCCGCCCGAACTTATGGAAAGCGAGTTTTTCGGACATAAAAAAGGCAGTTTCA
GCGGTGCAATTGCCGATAAAAAAGGTTTATTTCAAGCAGCCGAGGGCGGTACGCTATTTCTCGATGAAGTCGCCGATCTG
CCTCCTTCGCTGCAAGTCAAATTACTCCGCGCGATTCAGGAAAAAAAAGTACGCGCAGTCGGCGAACAACACGAAACACC
GGTCGATGTCCGCATCCTGAGCGCCACGCATAAAGATTTGAATCAATTGGTTCAGGAAGGGGTTTTTCGGCAAGATTTAT
ACTACCGGATCAATGTCATCGATCTCAATATTCCGCCGCTTCGCGAACGAGGCAATGATATCGCGCAACTAGCCGAACAT
ATTCTAGCCTCGTTAAATAGTAACAACGCTTTTCAAGTCCGGCTTTCGCAATCGGCGTTGACTGCATTGAAACATTATCA
TTTTCCGGGCAATGTTAGGGAGCTCGAGAATATTCTGGAGCGCGCCGTTGCGCTCAGCGACGGCAAAACGATCGATGCGG
ACGATTTAAATCTACCGATTAATCCGGAAATCGTCCCTGATGCGCCAGCGTTCGATCCGTCAAAAGCGTCGTTGGAAGAT
TATTTGGAAGATATCGAGCGAACCGCCATTACCATCGCACTCGAAAATAACCGATGGAATAAAACCGCAGCAGCAAAAGA
GCTGGGGTTATCGTTCCGATCATTGCGTTACCGGTTAAAAAAACTGGGCTTGGACTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4T4E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

64.126

100

0.643
  pilR Acinetobacter baumannii strain A118

52.155

100

0.544
  luxO Vibrio cholerae strain A1552

39.189

99.775

0.391

Multiple sequence alignment