Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   HQV14_RS07655 Genome accession   NZ_CP184730
Coordinates   1583739..1584236 (-) Length   165 a.a.
NCBI ID   WP_029694050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B0419     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578739..1589236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQV14_RS07630 (HQV14_07630) gcvPB 1578901..1580373 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  HQV14_RS07635 (HQV14_07635) gcvPA 1580366..1581712 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  HQV14_RS07640 (HQV14_07640) gcvT 1581732..1582823 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  HQV14_RS07645 (HQV14_07645) - 1582982..1583506 (-) 525 WP_001015121.1 shikimate kinase -
  HQV14_RS07650 (HQV14_07650) - 1583496..1583642 (-) 147 WP_001789879.1 hypothetical protein -
  HQV14_RS07655 (HQV14_07655) comGF 1583739..1584236 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  HQV14_RS07660 (HQV14_07660) comGE 1584154..1584453 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  HQV14_RS07665 (HQV14_07665) comGD 1584440..1584886 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  HQV14_RS07670 (HQV14_07670) comGC 1584864..1585175 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  HQV14_RS07675 (HQV14_07675) comGB 1585189..1586259 (-) 1071 WP_420542353.1 competence type IV pilus assembly protein ComGB Machinery gene
  HQV14_RS07680 (HQV14_07680) comGA 1586231..1587205 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  HQV14_RS07685 (HQV14_07685) - 1587257..1587880 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  HQV14_RS07690 (HQV14_07690) - 1587877..1588206 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  HQV14_RS07695 (HQV14_07695) - 1588206..1589192 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19199.92 Da        Isoelectric Point: 10.2192

>NTDB_id=1110892 HQV14_RS07655 WP_029694050.1 1583739..1584236(-) (comGF) [Staphylococcus aureus strain B0419]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1110892 HQV14_RS07655 WP_029694050.1 1583739..1584236(-) (comGF) [Staphylococcus aureus strain B0419]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.97

100

0.97
  comGF Staphylococcus aureus N315

96.97

100

0.97

Multiple sequence alignment