Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   HQV14_RS07665 Genome accession   NZ_CP184730
Coordinates   1584440..1584886 (-) Length   148 a.a.
NCBI ID   WP_072433556.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B0419     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579440..1589886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQV14_RS07635 (HQV14_07635) gcvPA 1580366..1581712 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  HQV14_RS07640 (HQV14_07640) gcvT 1581732..1582823 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  HQV14_RS07645 (HQV14_07645) - 1582982..1583506 (-) 525 WP_001015121.1 shikimate kinase -
  HQV14_RS07650 (HQV14_07650) - 1583496..1583642 (-) 147 WP_001789879.1 hypothetical protein -
  HQV14_RS07655 (HQV14_07655) comGF 1583739..1584236 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  HQV14_RS07660 (HQV14_07660) comGE 1584154..1584453 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  HQV14_RS07665 (HQV14_07665) comGD 1584440..1584886 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  HQV14_RS07670 (HQV14_07670) comGC 1584864..1585175 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  HQV14_RS07675 (HQV14_07675) comGB 1585189..1586259 (-) 1071 WP_420542353.1 competence type IV pilus assembly protein ComGB Machinery gene
  HQV14_RS07680 (HQV14_07680) comGA 1586231..1587205 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  HQV14_RS07685 (HQV14_07685) - 1587257..1587880 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  HQV14_RS07690 (HQV14_07690) - 1587877..1588206 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  HQV14_RS07695 (HQV14_07695) - 1588206..1589192 (-) 987 WP_000161314.1 ROK family glucokinase -
  HQV14_RS07700 (HQV14_07700) - 1589189..1589392 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17150.36 Da        Isoelectric Point: 10.3312

>NTDB_id=1110894 HQV14_RS07665 WP_072433556.1 1584440..1584886(-) (comGD) [Staphylococcus aureus strain B0419]
MEKQLQIRKLSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1110894 HQV14_RS07665 WP_072433556.1 1584440..1584886(-) (comGD) [Staphylococcus aureus strain B0419]
ATGGAGAAGCAGTTGCAAATTAGAAAGCTGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment