Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACN08A_RS11680 | Genome accession | NZ_CP184653 |
| Coordinates | 2308333..2308851 (+) | Length | 172 a.a. |
| NCBI ID | WP_016250467.1 | Uniprot ID | A0A0H2QMK6 |
| Organism | Enterococcus cecorum strain 2023EC-GS-SDAU-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2284525..2339044 | 2308333..2308851 | within | 0 |
| IScluster/Tn | 2306033..2307596 | 2308333..2308851 | flank | 737 |
Gene organization within MGE regions
Location: 2284525..2339044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN08A_RS11570 (ACN08A_11610) | - | 2285287..2285652 (+) | 366 | WP_016250489.1 | transposase | - |
| ACN08A_RS11575 (ACN08A_11615) | - | 2285905..2286207 (+) | 303 | WP_016250488.1 | heavy metal-binding domain-containing protein | - |
| ACN08A_RS11580 (ACN08A_11620) | tnpA | 2286335..2286739 (-) | 405 | WP_016250487.1 | IS200/IS605 family transposase | - |
| ACN08A_RS11585 (ACN08A_11625) | iscB | 2286697..2287983 (-) | 1287 | WP_016250486.1 | RNA-guided endonuclease IscB | - |
| ACN08A_RS11590 (ACN08A_11630) | - | 2288711..2289799 (-) | 1089 | WP_311897559.1 | glycerate kinase | - |
| ACN08A_RS11595 (ACN08A_11635) | jag | 2290051..2290848 (-) | 798 | WP_243170170.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| ACN08A_RS11600 (ACN08A_11640) | - | 2290861..2291676 (-) | 816 | WP_087402502.1 | YidC/Oxa1 family membrane protein insertase | - |
| ACN08A_RS11605 (ACN08A_11645) | rnpA | 2291716..2292069 (-) | 354 | WP_016250482.1 | ribonuclease P protein component | - |
| ACN08A_RS11610 (ACN08A_11650) | rpmH | 2292579..2292713 (-) | 135 | WP_006703104.1 | 50S ribosomal protein L34 | - |
| ACN08A_RS11615 (ACN08A_11655) | dnaA | 2293320..2294654 (+) | 1335 | WP_087402500.1 | chromosomal replication initiator protein DnaA | - |
| ACN08A_RS11620 (ACN08A_11660) | dnaN | 2294843..2295973 (+) | 1131 | WP_171310443.1 | DNA polymerase III subunit beta | - |
| ACN08A_RS11625 (ACN08A_11665) | - | 2296380..2297591 (+) | 1212 | WP_311897557.1 | MFS transporter | - |
| ACN08A_RS11630 (ACN08A_11670) | - | 2297729..2298064 (+) | 336 | WP_171313919.1 | AbrB family transcriptional regulator | - |
| ACN08A_RS11635 (ACN08A_11675) | yaaA | 2298318..2298566 (+) | 249 | WP_113784815.1 | S4 domain-containing protein YaaA | - |
| ACN08A_RS11640 (ACN08A_11680) | recF | 2298553..2299692 (+) | 1140 | WP_047334536.1 | DNA replication/repair protein RecF | - |
| ACN08A_RS11645 (ACN08A_11685) | gyrB | 2299719..2301668 (+) | 1950 | WP_311897556.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| ACN08A_RS11650 (ACN08A_11690) | gyrA | 2301689..2304193 (+) | 2505 | WP_311897554.1 | DNA gyrase subunit A | - |
| ACN08A_RS11655 (ACN08A_11695) | - | 2304409..2304780 (+) | 372 | WP_311897553.1 | MmcQ/YjbR family DNA-binding protein | - |
| ACN08A_RS11660 (ACN08A_11700) | - | 2304777..2305850 (+) | 1074 | WP_311897552.1 | endonuclease/exonuclease/phosphatase family protein | - |
| ACN08A_RS11665 (ACN08A_11705) | tnpA | 2306033..2306437 (+) | 405 | WP_113842998.1 | IS200/IS605 family transposase | - |
| ACN08A_RS11670 (ACN08A_11710) | tnpB | 2306454..2307596 (+) | 1143 | WP_311897550.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| ACN08A_RS11675 (ACN08A_11715) | rpsF | 2307991..2308290 (+) | 300 | WP_016250468.1 | 30S ribosomal protein S6 | - |
| ACN08A_RS11680 (ACN08A_11720) | ssb | 2308333..2308851 (+) | 519 | WP_016250467.1 | single-stranded DNA-binding protein | Machinery gene |
| ACN08A_RS11685 (ACN08A_11725) | rpsR | 2308881..2309117 (+) | 237 | WP_016250466.1 | 30S ribosomal protein S18 | - |
| ACN08A_RS11690 (ACN08A_11730) | - | 2309297..2309725 (+) | 429 | WP_311897549.1 | NUDIX hydrolase | - |
| ACN08A_RS11695 (ACN08A_11735) | - | 2310121..2314329 (+) | 4209 | WP_420285339.1 | polysaccharide lyase family 8 super-sandwich domain-containing protein | - |
| ACN08A_RS11700 (ACN08A_11740) | - | 2314538..2315989 (+) | 1452 | WP_171379165.1 | DHH family phosphoesterase | - |
| ACN08A_RS11705 (ACN08A_11745) | rplI | 2316002..2316454 (+) | 453 | WP_016250461.1 | 50S ribosomal protein L9 | - |
| ACN08A_RS11710 (ACN08A_11750) | - | 2316526..2316993 (+) | 468 | WP_311897547.1 | NUDIX hydrolase | - |
| ACN08A_RS11715 (ACN08A_11755) | dnaB | 2317149..2318519 (+) | 1371 | WP_311897546.1 | replicative DNA helicase | - |
| ACN08A_RS11720 (ACN08A_11760) | - | 2318569..2318889 (-) | 321 | WP_168931907.1 | hypothetical protein | - |
| ACN08A_RS11725 (ACN08A_11765) | - | 2319309..2321471 (+) | 2163 | WP_311897545.1 | PTS transporter subunit IIBC | - |
| ACN08A_RS11730 (ACN08A_11770) | - | 2321572..2322369 (+) | 798 | WP_311897544.1 | endonuclease/exonuclease/phosphatase family protein | - |
| ACN08A_RS11735 (ACN08A_11775) | - | 2322631..2323923 (+) | 1293 | WP_168931902.1 | adenylosuccinate synthase | - |
| ACN08A_RS11740 (ACN08A_11780) | - | 2324347..2325192 (+) | 846 | WP_311897543.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ACN08A_RS11745 (ACN08A_11785) | - | 2325464..2326666 (-) | 1203 | WP_087216125.1 | MFS transporter | - |
| ACN08A_RS11750 (ACN08A_11790) | - | 2326977..2328608 (-) | 1632 | WP_016250453.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| ACN08A_RS11755 (ACN08A_11795) | - | 2328955..2329905 (+) | 951 | WP_311897562.1 | ABC transporter ATP-binding protein | - |
| ACN08A_RS11760 (ACN08A_11800) | - | 2329915..2330508 (+) | 594 | WP_311897542.1 | ABC transporter ATP-binding protein | - |
| ACN08A_RS11765 (ACN08A_11805) | - | 2330674..2331660 (-) | 987 | WP_168931973.1 | LacI family DNA-binding transcriptional regulator | - |
| ACN08A_RS11770 (ACN08A_11810) | - | 2331960..2332769 (+) | 810 | WP_376716576.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| ACN08A_RS11775 (ACN08A_11815) | - | 2332756..2333568 (+) | 813 | WP_016250446.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| ACN08A_RS11780 (ACN08A_11820) | - | 2333593..2335062 (+) | 1470 | WP_168931972.1 | arylsulfatase | - |
| ACN08A_RS11785 (ACN08A_11825) | - | 2335092..2336213 (+) | 1122 | WP_016250444.1 | radical SAM/SPASM domain-containing protein | - |
| ACN08A_RS11790 (ACN08A_11830) | - | 2336210..2336983 (+) | 774 | WP_311897540.1 | sulfite exporter TauE/SafE family protein | - |
| ACN08A_RS11795 (ACN08A_11835) | - | 2337061..2337416 (+) | 356 | Protein_2266 | PTS lactose/cellobiose transporter subunit IIA | - |
| ACN08A_RS11800 (ACN08A_11840) | - | 2337689..2339044 (-) | 1356 | Protein_2267 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19042.89 Da Isoelectric Point: 4.7093
>NTDB_id=1110615 ACN08A_RS11680 WP_016250467.1 2308333..2308851(+) (ssb) [Enterococcus cecorum strain 2023EC-GS-SDAU-1]
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1110615 ACN08A_RS11680 WP_016250467.1 2308333..2308851(+) (ssb) [Enterococcus cecorum strain 2023EC-GS-SDAU-1]
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAACGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACTTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTGTACGTAACTGAAGTGGTTGCCGATAATTTTCAATTATTAGAGTCTAAAGC
AGTCAATGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAACGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACTTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTGTACGTAACTGAAGTGGTTGCCGATAATTTTCAATTATTAGAGTCTAAAGC
AGTCAATGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.345 |
100 |
0.61 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.409 |
100 |
0.547 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |