Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACOC81_RS18830 Genome accession   NZ_CP184649
Coordinates   4192525..4194741 (-) Length   738 a.a.
NCBI ID   WP_122446981.1    Uniprot ID   -
Organism   Pseudomonas viridiflava strain p21.B10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4187525..4199741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOC81_RS18800 (ACOC81_18800) murB 4188335..4189354 (-) 1020 WP_122446984.1 UDP-N-acetylmuramate dehydrogenase -
  ACOC81_RS18805 (ACOC81_18805) kdsB 4189389..4190153 (-) 765 WP_122446983.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACOC81_RS18810 (ACOC81_18810) - 4190150..4190335 (-) 186 WP_004884599.1 Trm112 family protein -
  ACOC81_RS18815 (ACOC81_18815) lpxK 4190353..4191348 (-) 996 WP_122446982.1 tetraacyldisaccharide 4'-kinase -
  ACOC81_RS18820 (ACOC81_18820) - 4191348..4191779 (-) 432 WP_004884601.1 ExbD/TolR family protein -
  ACOC81_RS18825 (ACOC81_18825) exbB 4191776..4192492 (-) 717 WP_074454496.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACOC81_RS18830 (ACOC81_18830) comA 4192525..4194741 (-) 2217 WP_122446981.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACOC81_RS18835 (ACOC81_18835) - 4194877..4195665 (-) 789 WP_004884611.1 ABC transporter permease -
  ACOC81_RS18840 (ACOC81_18840) - 4195662..4196594 (-) 933 WP_004884614.1 ABC transporter ATP-binding protein -
  ACOC81_RS18845 (ACOC81_18845) - 4196789..4197412 (-) 624 WP_004884615.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80243.42 Da        Isoelectric Point: 9.8372

>NTDB_id=1110568 ACOC81_RS18830 WP_122446981.1 4192525..4194741(-) (comA) [Pseudomonas viridiflava strain p21.B10]
MRTGMIALALGLLALRFLPALPDTWLLLLMPAVALMLLPFRTYPLAFFLFGLTWACVSAQSALDDRLLSRLDGQTLWLQG
TVVGLPSAAEGVVRFELADGVSRRAKLPRLMRIAWYGGPEVRSGERWRLAVKLKRPGGLVNPEAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSTTDWQVLQDTGTVHLLVISGQHISLLAGVIYAL
VGLLARWGLWPRTLPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVGLVLLWRLRFRHLGMTWPLLLSLNAVLVFEPL
VSLQPGFWLSFAAVGILILIFSGRLGAWSWMQSWTRAQWLIAVGLLPILMMLNLPISVSGPLANLLAVPWVSVVVLPAAL
IGTLLLPVPMLGEGLLWLAGGALEGLFVFLGWMANLVPAWLPSTTPAWTLILSLLGAFLLLLPKGVPMRPLGWPLLLLCV
FPPLKSVPAGQVDVLQLDVGQGLSILLRTRHHTLLYDTGPRFGEFDIGQRVVVPAIRKSGVRHLDVMLLSHADSDHAGGA
PAVHKAFTVGRVLGGDIERLAPALGARRCENGEQWEWDGVVFSIWIWEQAPEGNAGSCMLSVDAGGERLLLTGDVDAEAE
QAAIDSGFDLRAQWLQAPHHGSRSSSSKPFLRAVMPKGVLISRGRNNAFGHPHPLVMARYKWNGIASYDSAELGAIRLQL
GTYGSPEAQRAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1110568 ACOC81_RS18830 WP_122446981.1 4192525..4194741(-) (comA) [Pseudomonas viridiflava strain p21.B10]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGCCTGTTGGCCCTGCGCTTCCTGCCTGCCTTGCCTGATACCTGGCTGTT
GCTGCTGATGCCCGCTGTGGCCTTGATGCTGTTGCCATTTCGCACCTACCCGCTGGCCTTCTTCCTGTTCGGCTTGACGT
GGGCTTGCGTCTCGGCGCAATCGGCACTGGATGATCGATTGCTGTCCCGGCTCGACGGCCAGACGCTATGGCTGCAAGGC
ACGGTGGTCGGGTTGCCGAGTGCGGCTGAGGGGGTGGTGCGTTTCGAGCTCGCGGATGGTGTGTCACGACGGGCGAAATT
ACCCCGGCTGATGCGCATTGCCTGGTATGGCGGTCCTGAAGTGCGCAGCGGTGAGCGATGGCGACTGGCGGTGAAGCTCA
AGCGGCCGGGTGGACTGGTTAATCCCGAAGCGTTCGATTACGAGGCCTGGTTATTGGCCCAGCGTATCGGCGCGACCGGC
ACCGTGGTGGACGGTCAGTTGCTGGCGCCGGCGCGTGCTGCCTGGCGCGATGCCATTCGCCAACGGCTGCTGGCCGTCGA
CGCGCAGGGGCGCGAAGGCGGGCTGGCGGCGCTTGTGCTGGGGGATGGCTCGGGCTTGTCGACCACTGACTGGCAAGTGC
TGCAGGACACCGGCACTGTGCATTTGCTGGTGATCTCCGGACAGCACATCAGCCTCTTGGCTGGCGTGATTTATGCGCTG
GTGGGCCTGCTGGCGCGCTGGGGACTGTGGCCGCGGACTCTGCCGTGGCTGCCCTGGGCGTGCGGTCTGGCGTTCGCGTC
GGCGCTGGGGTATGGCTTGCTGGCCGGGTTCGACGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGGTCTGGTTCTGCTCT
GGCGTTTGCGCTTTCGGCATCTGGGCATGACCTGGCCGTTACTGCTGTCGCTCAACGCCGTGCTGGTGTTCGAGCCGCTG
GTGAGTCTGCAGCCGGGGTTCTGGCTGTCTTTTGCGGCGGTCGGGATTCTGATCCTTATCTTCAGTGGCCGCCTCGGTGC
CTGGAGCTGGATGCAGAGCTGGACGAGAGCCCAGTGGCTGATTGCCGTCGGCCTGCTGCCTATTCTGATGATGTTGAACC
TGCCGATCAGTGTCAGCGGTCCGCTGGCCAATTTGCTGGCTGTGCCTTGGGTCAGTGTCGTCGTTCTGCCTGCGGCACTG
ATTGGCACGCTGTTGCTGCCTGTTCCGATGCTGGGCGAGGGCTTATTGTGGCTGGCCGGTGGGGCGCTGGAAGGGCTGTT
CGTGTTTCTGGGCTGGATGGCGAACCTTGTGCCTGCCTGGCTGCCCAGTACCACGCCGGCCTGGACTCTGATCCTGAGTC
TGCTGGGCGCGTTCTTGCTCCTGCTGCCCAAAGGTGTGCCGATGCGGCCTCTGGGCTGGCCGCTGCTGTTGCTGTGCGTG
TTTCCACCACTCAAGTCGGTGCCCGCCGGACAGGTTGACGTTCTGCAACTGGATGTGGGGCAGGGGCTGTCGATTCTGTT
GCGCACCCGACACCACACACTGCTGTATGACACCGGGCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGGGTGGTCGTGC
CCGCCATTCGCAAGAGCGGGGTACGGCATCTGGACGTGATGCTGCTCAGTCATGCCGATTCGGATCATGCCGGAGGTGCA
CCGGCAGTCCACAAGGCGTTTACGGTCGGGCGTGTGCTGGGCGGAGACATTGAGCGCCTTGCGCCTGCACTCGGGGCACG
TCGTTGTGAAAACGGCGAGCAGTGGGAGTGGGACGGCGTGGTGTTTTCGATCTGGATCTGGGAGCAGGCACCCGAAGGCA
ATGCAGGGTCGTGTATGTTGAGTGTCGACGCCGGTGGCGAGCGATTGTTGCTGACCGGCGATGTTGATGCCGAGGCCGAA
CAGGCGGCCATCGACAGTGGATTCGACCTGCGCGCGCAGTGGCTGCAGGCACCTCATCACGGCAGTCGGTCCTCGTCCTC
TAAACCGTTTCTGAGAGCGGTCATGCCGAAAGGTGTGCTGATTTCCCGCGGACGCAACAATGCGTTCGGCCACCCACACC
CGCTGGTCATGGCGCGTTATAAATGGAACGGTATCGCCAGCTACGACAGTGCCGAGCTGGGTGCCATCCGTTTGCAACTG
GGTACTTACGGCAGCCCTGAGGCACAGCGCGCGCAGCGACGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.57

97.019

0.607
  comA Ralstonia pseudosolanacearum GMI1000

32.706

100

0.377

Multiple sequence alignment