Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACOC81_RS18825 Genome accession   NZ_CP184649
Coordinates   4191776..4192492 (-) Length   238 a.a.
NCBI ID   WP_074454496.1    Uniprot ID   A0AA46VYE7
Organism   Pseudomonas viridiflava strain p21.B10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4186776..4197492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOC81_RS18800 (ACOC81_18800) murB 4188335..4189354 (-) 1020 WP_122446984.1 UDP-N-acetylmuramate dehydrogenase -
  ACOC81_RS18805 (ACOC81_18805) kdsB 4189389..4190153 (-) 765 WP_122446983.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACOC81_RS18810 (ACOC81_18810) - 4190150..4190335 (-) 186 WP_004884599.1 Trm112 family protein -
  ACOC81_RS18815 (ACOC81_18815) lpxK 4190353..4191348 (-) 996 WP_122446982.1 tetraacyldisaccharide 4'-kinase -
  ACOC81_RS18820 (ACOC81_18820) - 4191348..4191779 (-) 432 WP_004884601.1 ExbD/TolR family protein -
  ACOC81_RS18825 (ACOC81_18825) exbB 4191776..4192492 (-) 717 WP_074454496.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACOC81_RS18830 (ACOC81_18830) comA 4192525..4194741 (-) 2217 WP_122446981.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACOC81_RS18835 (ACOC81_18835) - 4194877..4195665 (-) 789 WP_004884611.1 ABC transporter permease -
  ACOC81_RS18840 (ACOC81_18840) - 4195662..4196594 (-) 933 WP_004884614.1 ABC transporter ATP-binding protein -
  ACOC81_RS18845 (ACOC81_18845) - 4196789..4197412 (-) 624 WP_004884615.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.42 Da        Isoelectric Point: 9.1401

>NTDB_id=1110567 ACOC81_RS18825 WP_074454496.1 4191776..4192492(-) (exbB) [Pseudomonas viridiflava strain p21.B10]
MIEWRQFFKGVVTVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQDQKLDKEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLAKAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1110567 ACOC81_RS18825 WP_074454496.1 4191776..4192492(-) (exbB) [Pseudomonas viridiflava strain p21.B10]
ATGATAGAGTGGCGCCAATTTTTCAAGGGAGTGGTCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGTTGCC
GATCATTTTGAGTTCCATCGCCGCTGCCGGCATCATCATCGAACGGCTCTGGACGCTGCGCGCCAGCCGTATCACACCGC
CGCACTTGCTGGGGCAGGTCTGGCAGTGGATTCAGGATCAGAAACTCGATAAAGAGAAGCTCAAGCAACTGCGTGCCGAT
TCGCCGCTGGGTGAAATCCTCGCGGCAGGCCTGGCCAACTCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGA
AGCCGCAGCGCGGGTCATTCATGACCTGGAGCGTTACCTGAGTGCGCTGGGTTCGATTGCTGCGATGGCGCCGTTGCTGG
GTTTGCTGGGCACCGTGCTGGGCATGATCGATATTTTCGGCTCGTTCAACAGCTCTGGAGCCACGGCCAACGCCGGTGTT
CTCGCGGGGGGTATTTCCAAGGCGCTGATCTGTACCGCGTCGGGCCTGATCGTGGCCATTCCGGCCATCTTCTTTCACCG
TTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTCGAGGTGGTGCAGGGCG
ACCGTGACGTCGATCTGATCGACGCCAAGGTCGACCTCAAGTCCCTGGCCAAGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

88.235

0.697

Multiple sequence alignment