Detailed information NTG1110558

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACOC81_RS04800
• Genome accession: NZ_CP184649
• Coordinates: 1006888..1008228 (-)
• Length: 446 a.a.
• NCBI ID: WP_122447120.1
• Uniprot ID: -
• Organism: Pseudomonas viridiflava strain p21.B10
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1001888..1013228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOC81_RS04790 (ACOC81_04790)	-	1005093..1005494 (+)	402	WP_122439239.1	type IV pilin protein	-
ACOC81_RS04795 (ACOC81_04795)	thiO	1005522..1006634 (+)	1113	WP_122439238.1	glycine oxidase ThiO	-
ACOC81_RS04800 (ACOC81_04800)	pilR	1006888..1008228 (-)	1341	WP_122447120.1	sigma-54-dependent transcriptional regulator	Regulator
ACOC81_RS04805 (ACOC81_04805)	pilS	1008231..1009823 (-)	1593	WP_122411509.1	sensor histidine kinase	Regulator
ACOC81_RS04810 (ACOC81_04810)	-	1009813..1010052 (-)	240	WP_074454641.1	PP0621 family protein	-
ACOC81_RS04815 (ACOC81_04815)	-	1010176..1011198 (-)	1023	WP_004884073.1	outer membrane protein assembly factor BamD	-
ACOC81_RS04820 (ACOC81_04820)	rluD	1011348..1012310 (+)	963	WP_004884074.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACOC81_RS04825 (ACOC81_04825)	pgeF	1012307..1013035 (+)	729	WP_004884075.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49900.16 Da
• Isoelectric Point: 6.5927

>NTDB_id=1110558 ACOC81_RS04800 WP_122447120.1 1006888..1008228(-) (pilR) [Pseudomonas viridiflava strain p21.B10]
MTPRQKILIVDDEPDIRELLEITLGRMKLDTRSACNVAEARQCLAREAFDLCLTDMRLPDGNGLELVQHIQQNFAHVPVA
MITAHGSLDTAIHALKAGAFDFLTKPVDLGRLRELVNSALRLTPVVQPVRTLDNRLLGDSPPMRTLRSQIAKLARSQAPV
YISGESGSGKELVARLIHEQGPRGEKPFVPVNCGAIPSDLMESEFFGHRKGSFTGAHEDKPGLFQAAQNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAI
VLQRLANNSGLPAAKLNAQALDTLKNYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESARPQETDGPNLADIDNLE
DYLEGIERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=1110558 ACOC81_RS04800 WP_122447120.1 1006888..1008228(-) (pilR) [Pseudomonas viridiflava strain p21.B10]
ATGACCCCACGGCAAAAGATCCTGATCGTCGACGATGAGCCGGACATTCGCGAACTCCTGGAGATCACTCTGGGCCGGAT
GAAGCTCGACACCCGCAGCGCCTGCAACGTCGCCGAGGCACGTCAGTGTCTGGCTCGCGAAGCATTCGACCTGTGCCTGA
CGGACATGCGCCTGCCGGACGGCAACGGCCTCGAGCTGGTGCAGCATATCCAGCAGAACTTCGCTCACGTTCCGGTGGCG
ATGATCACCGCGCATGGCAGTCTGGATACTGCTATCCACGCGCTCAAGGCCGGTGCGTTCGACTTTCTGACCAAACCGGT
AGACCTCGGTCGCCTGCGTGAACTGGTCAACAGCGCTCTACGCCTCACACCCGTCGTACAGCCGGTACGCACCCTGGATA
ATCGCCTGCTGGGCGATTCGCCGCCCATGCGCACACTGCGCAGCCAGATCGCCAAACTGGCGCGCAGTCAGGCCCCCGTT
TACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCAGGTTGATTCACGAACAAGGGCCACGCGGAGAGAAACC
CTTCGTGCCGGTCAACTGCGGCGCCATTCCTTCCGACCTGATGGAAAGCGAATTCTTCGGGCATCGCAAAGGCAGCTTCA
CCGGTGCCCATGAAGACAAGCCGGGGCTGTTCCAGGCGGCGCAGAACGGCACGCTGTTTCTGGACGAGGTGGCCGATCTG
CCGCTGGCCATGCAGGTCAAACTGCTGCGCGCGATTCAGGAGAAGTCCATCCGCAGCGTTGGCGGCCAGCAGGAACAGGT
GGTGGACGTACGGATTCTCTGTGCGACCCACAAGGACCTGAACGTGGAGGTGGCCGCAGGACGCTTCCGGCAGGATCTGT
ATTACCGATTGAACGTCATCGAGTTGCGCGTACCGTCGCTGCGTGAGCGTCGTGAAGACATCGACCAACTAGCCGCCATC
GTCCTGCAGCGCCTGGCGAACAACAGCGGCCTGCCCGCCGCCAAGCTCAACGCCCAGGCACTGGATACGCTGAAGAACTA
TCGTTTTCCCGGCAACGTTCGTGAGCTGGAGAACATGCTGGAGCGCGCCTACACGTTGTGCGAGAACGACGAAATCCACG
CATCCGACCTGCGCCTGGCCGAGTCTGCCAGACCACAGGAAACCGACGGCCCGAACCTGGCCGACATCGACAATCTGGAA
GATTACCTGGAAGGCATCGAGCGCAAACTGATTCTTCAGGCCCTGGAAGAAACCCGCTGGAACCGCACAGCGGCAGCCCA
GCGGCTGAGCCTGTCATTCAGGTCGATGCGTTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.684	99.327	0.791
pilR	Acinetobacter baumannii strain A118	49.673	100	0.511