Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACOC81_RS04805 Genome accession   NZ_CP184649
Coordinates   1008231..1009823 (-) Length   530 a.a.
NCBI ID   WP_122411509.1    Uniprot ID   -
Organism   Pseudomonas viridiflava strain p21.B10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003231..1014823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOC81_RS04790 (ACOC81_04790) - 1005093..1005494 (+) 402 WP_122439239.1 type IV pilin protein -
  ACOC81_RS04795 (ACOC81_04795) thiO 1005522..1006634 (+) 1113 WP_122439238.1 glycine oxidase ThiO -
  ACOC81_RS04800 (ACOC81_04800) pilR 1006888..1008228 (-) 1341 WP_122447120.1 sigma-54-dependent transcriptional regulator Regulator
  ACOC81_RS04805 (ACOC81_04805) pilS 1008231..1009823 (-) 1593 WP_122411509.1 sensor histidine kinase Regulator
  ACOC81_RS04810 (ACOC81_04810) - 1009813..1010052 (-) 240 WP_074454641.1 PP0621 family protein -
  ACOC81_RS04815 (ACOC81_04815) - 1010176..1011198 (-) 1023 WP_004884073.1 outer membrane protein assembly factor BamD -
  ACOC81_RS04820 (ACOC81_04820) rluD 1011348..1012310 (+) 963 WP_004884074.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACOC81_RS04825 (ACOC81_04825) pgeF 1012307..1013035 (+) 729 WP_004884075.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58397.44 Da        Isoelectric Point: 6.7788

>NTDB_id=1110559 ACOC81_RS04805 WP_122411509.1 1008231..1009823(-) (pilS) [Pseudomonas viridiflava strain p21.B10]
MTAEPLSLGSAQAQRILRLYHLYRLVIGVLLVSLISSSLDTELLQMANPNLFRAGCWLYLVSNILVVVLLERPSRQSHLF
SLALADAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISLGTPSVSSDYVQAGLLG
AMCFAAAMLVQALTARMLNSEVLAKQRAADVDNLEELNDLILQRMRTGILVLDARRQVLLANQGALNLLGHEQLVGEVID
HYCPQLVDRLRHWLINPVMVPRSLSTSAIGPELQPSFAAVNRGDQLQTLIFLEDLSQVAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELTAPDRRLGQIIHDQSRRINLVIENVLQLSRRREAQREVLDLKYWLEAFVAEFRSTAPPD
QRVETEIGVGMLTTRMDPEQLNQVVTNLLQNGLRYSRQHHSTAQVLLRLYHDQKSDLPTLEVLDDGPGVSEKHLSRLFEP
FFTTESKGTGLGLYLSRELCESNQAHLDYAPREGGGSCMRITFAHPFKPS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1110559 ACOC81_RS04805 WP_122411509.1 1008231..1009823(-) (pilS) [Pseudomonas viridiflava strain p21.B10]
GTGACCGCTGAGCCTCTTTCGCTCGGCAGTGCCCAAGCGCAACGGATCCTGCGGCTTTATCACCTTTATCGGCTCGTCAT
CGGTGTCCTGCTGGTATCGCTGATTTCCAGCAGCCTGGACACCGAACTGTTGCAGATGGCCAACCCGAACCTGTTTCGCG
CAGGCTGCTGGCTGTACCTGGTGTCCAATATCCTGGTGGTGGTGCTGCTGGAGCGGCCGAGCCGCCAGTCTCATCTTTTC
AGCCTGGCGCTGGCAGACGCGATCATGCTTTCCGGCCTTTTCTATGCGGCCGGAGGGCCTTCGAGCGGTATCGGCAACCT
GCTGATCGCGTCGGTCGCGATCAGTAATGTGTTGTTGCGTGGCCGCATCGGGCTGCTGATCGCGGCAGTCTCGGCCATCG
GCATCATCTACCTGACCTTCTACATCAGCCTCGGGACGCCATCGGTTTCCAGCGACTACGTGCAGGCCGGCCTGCTGGGT
GCCATGTGCTTCGCTGCCGCCATGCTGGTGCAGGCACTCACGGCACGCATGCTGAACAGCGAAGTGCTGGCCAAGCAGCG
GGCTGCCGATGTCGATAACCTCGAAGAACTCAACGACCTGATTCTGCAACGCATGCGCACCGGCATTCTGGTACTGGATG
CGCGCCGTCAGGTGCTGCTGGCCAATCAGGGCGCGCTGAACCTGCTGGGGCATGAGCAGTTGGTCGGCGAAGTGATCGAC
CATTACTGCCCGCAGTTGGTGGATCGCCTGCGCCACTGGCTGATCAACCCGGTCATGGTGCCGCGCAGTCTCTCGACTTC
TGCCATCGGGCCAGAGCTGCAGCCCAGCTTTGCGGCGGTCAACCGAGGCGATCAGTTGCAGACCCTGATCTTCCTGGAAG
ACCTGTCGCAGGTTGCCCATCAGGCCCAGCAGCTCAAGCTTGCCGCACTGGGCCGCCTCACCGCCGGCATCGCTCATGAA
ATCCGCAACCCGCTCGGCGCAGTCAGCCATGCGGCGCAGTTGCTGAACGAGTCGGAAGAATTGACAGCACCGGACCGTCG
TCTGGGGCAGATCATTCATGACCAGTCGCGGCGGATCAATCTGGTCATCGAGAACGTGCTGCAACTGTCCAGACGACGTG
AAGCCCAGCGTGAGGTGCTTGACCTGAAATACTGGCTGGAAGCCTTTGTTGCGGAGTTTCGCAGCACCGCCCCGCCTGAT
CAAAGGGTTGAGACCGAAATCGGTGTCGGCATGCTGACCACGCGCATGGACCCCGAGCAGTTGAATCAGGTGGTCACCAA
CCTGCTGCAGAACGGCCTGCGCTACAGCCGCCAGCACCACTCCACCGCGCAGGTGCTGCTGAGGCTGTATCACGATCAGA
AAAGCGATCTGCCGACGCTGGAGGTCCTTGATGACGGCCCCGGCGTCAGCGAGAAGCACCTGAGCAGACTGTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGGACGGGCCTTGGCCTCTACCTGTCGCGCGAGTTATGCGAAAGCAATCAAGCCCATCT
GGACTACGCCCCTCGGGAAGGCGGCGGCAGTTGCATGCGGATTACCTTCGCCCACCCGTTCAAACCGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.394

100

0.615

Multiple sequence alignment