Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DP15_RS04605 Genome accession   NZ_CP008926
Coordinates   920341..920937 (-) Length   198 a.a.
NCBI ID   WP_038432673.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain ATCC 19615     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 915341..925937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP15_RS04570 (DP15_942) - 915400..915705 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DP15_RS04575 (DP15_943) ruvX 915717..916136 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DP15_RS04580 (DP15_944) - 916133..916402 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DP15_RS04585 (DP15_945) spx 916517..916915 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DP15_RS04590 (DP15_946) recA 917206..918342 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  DP15_RS04595 (DP15_947) cinA 918431..919702 (-) 1272 WP_002992182.1 competence/damage-inducible protein A Machinery gene
  DP15_RS04600 (DP15_948) - 919771..920331 (-) 561 WP_002992183.1 DNA-3-methyladenine glycosylase I -
  DP15_RS04605 (DP15_949) ruvA 920341..920937 (-) 597 WP_038432673.1 Holliday junction branch migration protein RuvA Machinery gene
  DP15_RS04610 (DP15_950) - 920939..922159 (-) 1221 WP_002992187.1 MFS transporter -
  DP15_RS04615 (DP15_951) hexB 922170..924152 (-) 1983 WP_002992189.1 DNA mismatch repair endonuclease MutL Machinery gene
  DP15_RS04620 (DP15_952) - 924247..925398 (-) 1152 WP_003058754.1 site-specific integrase -
  DP15_RS10085 - 925737..925790 (+) 54 WP_229020936.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21865.24 Da        Isoelectric Point: 6.8836

>NTDB_id=110952 DP15_RS04605 WP_038432673.1 920341..920937(-) (ruvA) [Streptococcus pyogenes strain ATCC 19615]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYKAKELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=110952 DP15_RS04605 WP_038432673.1 920341..920937(-) (ruvA) [Streptococcus pyogenes strain ATCC 19615]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGATG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAAGCAAAAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATA
CATCAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424

Multiple sequence alignment