Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACKTSL_RS00070 | Genome accession | NZ_AP035890 |
| Coordinates | 14601..15119 (+) | Length | 172 a.a. |
| NCBI ID | WP_016250467.1 | Uniprot ID | A0A0H2QMK6 |
| Organism | Enterococcus cecorum strain SMUHEc01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 9601..20119
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTSL_RS00050 (SMUE_00100) | gyrA | 9839..12343 (+) | 2505 | WP_322380722.1 | DNA gyrase subunit A | - |
| ACKTSL_RS00055 (SMUE_00110) | - | 12559..12930 (+) | 372 | WP_047334533.1 | MmcQ/YjbR family DNA-binding protein | - |
| ACKTSL_RS00060 (SMUE_00120) | - | 12927..14000 (+) | 1074 | WP_407858264.1 | endonuclease/exonuclease/phosphatase family protein | - |
| ACKTSL_RS00065 (SMUE_00130) | rpsF | 14259..14558 (+) | 300 | WP_016250468.1 | 30S ribosomal protein S6 | - |
| ACKTSL_RS00070 (SMUE_00140) | ssb | 14601..15119 (+) | 519 | WP_016250467.1 | single-stranded DNA-binding protein | Machinery gene |
| ACKTSL_RS00075 (SMUE_00150) | rpsR | 15149..15385 (+) | 237 | WP_016250466.1 | 30S ribosomal protein S18 | - |
| ACKTSL_RS00080 (SMUE_00160) | - | 15565..15993 (+) | 429 | WP_311897549.1 | NUDIX hydrolase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19042.89 Da Isoelectric Point: 4.7093
>NTDB_id=110910 ACKTSL_RS00070 WP_016250467.1 14601..15119(+) (ssb) [Enterococcus cecorum strain SMUHEc01]
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=110910 ACKTSL_RS00070 WP_016250467.1 14601..15119(+) (ssb) [Enterococcus cecorum strain SMUHEc01]
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTAAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGGCAACGTGTGTACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAATGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTAAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGGCAACGTGTGTACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAATGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.345 |
100 |
0.61 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.409 |
100 |
0.547 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |