Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ID09_RS12490 Genome accession   NZ_CP008921
Coordinates   2075235..2075435 (-) Length   66 a.a.
NCBI ID   WP_228380931.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2070235..2080435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS10180 (ID09_10455) - 2070261..2071202 (-) 942 WP_024381167.1 3'-5' exoribonuclease YhaM family protein -
  ID09_RS10185 (ID09_10460) - 2071192..2072433 (-) 1242 WP_024381168.1 DNA recombination protein RmuC -
  ID09_RS10190 (ID09_10465) - 2072434..2073066 (-) 633 WP_014736458.1 thiamine diphosphokinase -
  ID09_RS10195 (ID09_10470) rpe 2073059..2073718 (-) 660 WP_024381169.1 ribulose-phosphate 3-epimerase -
  ID09_RS10200 (ID09_10475) rsgA 2073733..2074608 (-) 876 WP_024381170.1 ribosome small subunit-dependent GTPase A -
  ID09_RS12490 comA 2075235..2075435 (-) 201 WP_228380931.1 hypothetical protein Regulator
  ID09_RS10210 (ID09_10485) - 2075445..2076800 (-) 1356 WP_228380930.1 ABC transporter transmembrane domain-containing protein -
  ID09_RS10215 (ID09_10490) - 2077221..2079665 (-) 2445 WP_024381171.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 66 a.a.        Molecular weight: 7432.43 Da        Isoelectric Point: 4.4262

>NTDB_id=110904 ID09_RS12490 WP_228380931.1 2075235..2075435(-) (comA) [Streptococcus suis 6407]
MIRALLQDKDILLLDESLSALDQETYTVIEAYLTSLADKTLIHISHRVSDDVLSRYNGVVRIGESN

Nucleotide


Download         Length: 201 bp        

>NTDB_id=110904 ID09_RS12490 WP_228380931.1 2075235..2075435(-) (comA) [Streptococcus suis 6407]
TTGATTCGTGCCTTGCTGCAAGATAAGGATATCTTGTTGCTGGATGAAAGTCTGTCTGCCTTGGATCAGGAAACCTATAC
AGTAATTGAAGCCTACCTTACCTCACTAGCTGATAAGACGCTCATTCATATTTCACACCGCGTGTCCGATGATGTCCTTT
CTCGCTATAATGGGGTGGTACGGATTGGGGAGAGCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.191

71.212

0.379
  comA Streptococcus mitis NCTC 12261

51.064

71.212

0.364
  comA Streptococcus pneumoniae Rx1

51.064

71.212

0.364
  comA Streptococcus pneumoniae D39

51.064

71.212

0.364
  comA Streptococcus pneumoniae R6

51.064

71.212

0.364
  comA Streptococcus pneumoniae TIGR4

51.064

71.212

0.364

Multiple sequence alignment