Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACOBR6_RS04975 | Genome accession | NZ_CP184530 |
| Coordinates | 1017148..1017669 (+) | Length | 173 a.a. |
| NCBI ID | WP_002829316.1 | Uniprot ID | A0AAN5YAY2 |
| Organism | Pediococcus acidilactici strain HI5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1012148..1022669
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOBR6_RS04965 (ACOBR6_04970) | gyrA | 1014119..1016638 (+) | 2520 | WP_420223126.1 | DNA gyrase subunit A | - |
| ACOBR6_RS04970 (ACOBR6_04975) | rpsF | 1016824..1017111 (+) | 288 | WP_002829317.1 | 30S ribosomal protein S6 | - |
| ACOBR6_RS04975 (ACOBR6_04980) | ssb | 1017148..1017669 (+) | 522 | WP_002829316.1 | single-stranded DNA-binding protein | Machinery gene |
| ACOBR6_RS04980 (ACOBR6_04985) | rpsR | 1017699..1017935 (+) | 237 | WP_002829315.1 | 30S ribosomal protein S18 | - |
| ACOBR6_RS04985 (ACOBR6_04990) | - | 1018148..1020145 (+) | 1998 | WP_002829314.1 | DHH family phosphoesterase | - |
| ACOBR6_RS04990 (ACOBR6_04995) | rplI | 1020151..1020603 (+) | 453 | WP_002830768.1 | 50S ribosomal protein L9 | - |
| ACOBR6_RS04995 (ACOBR6_05000) | dnaB | 1020653..1022050 (+) | 1398 | WP_002829312.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 18874.39 Da Isoelectric Point: 4.6207
>NTDB_id=1109029 ACOBR6_RS04975 WP_002829316.1 1017148..1017669(+) (ssb) [Pediococcus acidilactici strain HI5]
MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNNGQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANG
GQSIDISDDDLPF
MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNNGQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANG
GQSIDISDDDLPF
Nucleotide
Download Length: 522 bp
>NTDB_id=1109029 ACOBR6_RS04975 WP_002829316.1 1017148..1017669(+) (ssb) [Pediococcus acidilactici strain HI5]
ATGATTAATCGTGCCGTACTAGTTGGACGTTTAACAAGAGATCCTGAACTACGATATACAAGTAGTGGTGCTGCCGTAGT
TAGTTTTACCGTGGCGGTTAACCGTCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAAGCGGCGGAAAACTTCGCCAACTTCACGCGCAAGGGCTCTCTAGTAGGTATCGACGGTCGGATCCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTATACGTTACCGAAGTTGTTGCGGATAACTTCTCACTTCTTGAATCCCGTTC
GGCTTCCGAACGCCGTCAAGAAAATGAAGGCTTCAACAACGGTCAATCTGCCCCTTCACAATCATCTGCTGGAAATCCTT
TTGACAGTGGTCAAGCGAATAACAATGGTGCTGCATCGCAGCCTAACAATTCGAACCCGAATGATCCGTTTGCAAATGGC
GGACAGTCAATTGATATTTCTGACGATGATTTACCGTTCTAA
ATGATTAATCGTGCCGTACTAGTTGGACGTTTAACAAGAGATCCTGAACTACGATATACAAGTAGTGGTGCTGCCGTAGT
TAGTTTTACCGTGGCGGTTAACCGTCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAAGCGGCGGAAAACTTCGCCAACTTCACGCGCAAGGGCTCTCTAGTAGGTATCGACGGTCGGATCCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTATACGTTACCGAAGTTGTTGCGGATAACTTCTCACTTCTTGAATCCCGTTC
GGCTTCCGAACGCCGTCAAGAAAATGAAGGCTTCAACAACGGTCAATCTGCCCCTTCACAATCATCTGCTGGAAATCCTT
TTGACAGTGGTCAAGCGAATAACAATGGTGCTGCATCGCAGCCTAACAATTCGAACCCGAATGATCCGTTTGCAAATGGC
GGACAGTCAATTGATATTTCTGACGATGATTTACCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
69.318 |
100 |
0.705 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60 |
100 |
0.607 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
61.321 |
61.272 |
0.376 |