Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOBR3_RS01620 Genome accession   NZ_CP184528
Coordinates   349110..349700 (-) Length   196 a.a.
NCBI ID   WP_005690377.1    Uniprot ID   A0A508YN23
Organism   Lacticaseibacillus rhamnosus strain TB3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 344110..354700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOBR3_RS01590 (ACOBR3_01590) - 344444..344869 (+) 426 WP_005690370.1 hypothetical protein -
  ACOBR3_RS01595 (ACOBR3_01595) - 344948..345142 (-) 195 WP_005685667.1 hypothetical protein -
  ACOBR3_RS01600 (ACOBR3_01600) cydB 345182..346201 (-) 1020 WP_005690372.1 cytochrome d ubiquinol oxidase subunit II -
  ACOBR3_RS01605 (ACOBR3_01605) - 346194..347672 (-) 1479 WP_005690374.1 cytochrome ubiquinol oxidase subunit I -
  ACOBR3_RS01610 (ACOBR3_01610) - 347983..348489 (+) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  ACOBR3_RS01615 (ACOBR3_01615) rpsR 348782..349018 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  ACOBR3_RS01620 (ACOBR3_01620) ssb 349110..349700 (-) 591 WP_005690377.1 single-stranded DNA-binding protein Machinery gene
  ACOBR3_RS01625 (ACOBR3_01625) rpsF 349730..350026 (-) 297 WP_005685677.1 30S ribosomal protein S6 -
  ACOBR3_RS01630 (ACOBR3_01630) ssb 350153..350584 (-) 432 WP_005690380.1 single-stranded DNA-binding protein -
  ACOBR3_RS01635 (ACOBR3_01635) - 350694..350780 (+) 87 Protein_323 deoxyribose-phosphate aldolase -
  ACOBR3_RS01640 (ACOBR3_01640) - 350908..351357 (-) 450 WP_204987108.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  ACOBR3_RS01645 (ACOBR3_01645) - 351380..352795 (-) 1416 WP_019728464.1 IS5-like element ISLrh2 family transposase -
  ACOBR3_RS01650 (ACOBR3_01650) - 353097..353324 (-) 228 WP_012807316.1 hypothetical protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20905.63 Da        Isoelectric Point: 4.9056

>NTDB_id=1108957 ACOBR3_RS01620 WP_005690377.1 349110..349700(-) (ssb) [Lacticaseibacillus rhamnosus strain TB3]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
SPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1108957 ACOBR3_RS01620 WP_005690377.1 349110..349700(-) (ssb) [Lacticaseibacillus rhamnosus strain TB3]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGAGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTTACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AGCCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A508YN23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.735

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5

Multiple sequence alignment