Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ID09_RS08045 Genome accession   NZ_CP008921
Coordinates   1645549..1646232 (-) Length   227 a.a.
NCBI ID   WP_002936735.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640549..1651232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS08020 (ID09_08255) - 1641027..1641344 (-) 318 WP_002936711.1 PadR family transcriptional regulator -
  ID09_RS12210 (ID09_08260) - 1641341..1641505 (-) 165 WP_024381618.1 hypothetical protein -
  ID09_RS08030 (ID09_08265) - 1641694..1643706 (-) 2013 WP_024381619.1 ABC transporter permease -
  ID09_RS08035 (ID09_08270) - 1643708..1644466 (-) 759 WP_022540669.1 ABC transporter ATP-binding protein -
  ID09_RS08040 (ID09_08275) - 1644564..1645556 (-) 993 WP_024390619.1 sensor histidine kinase -
  ID09_RS08045 (ID09_08280) braR 1645549..1646232 (-) 684 WP_002936735.1 response regulator transcription factor Regulator
  ID09_RS08050 (ID09_08285) - 1646402..1647571 (+) 1170 WP_024381621.1 DUF2974 domain-containing protein -
  ID09_RS08055 (ID09_08290) - 1647586..1648710 (-) 1125 WP_014637088.1 aminotransferase -
  ID09_RS08060 (ID09_08295) - 1648858..1649619 (-) 762 WP_024381622.1 nuclear transport factor 2 family protein -
  ID09_RS08065 (ID09_08300) - 1649631..1651142 (-) 1512 WP_014637089.1 ABC transporter permease/substrate-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26523.77 Da        Isoelectric Point: 4.6132

>NTDB_id=110876 ID09_RS08045 WP_002936735.1 1645549..1646232(-) (braR) [Streptococcus suis 6407]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=110876 ID09_RS08045 WP_002936735.1 1645549..1646232(-) (braR) [Streptococcus suis 6407]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GTCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTAGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAACATTGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383

Multiple sequence alignment