Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACN079_RS24800 Genome accession   NZ_CP184478
Coordinates   5521836..5523182 (+) Length   448 a.a.
NCBI ID   WP_420232253.1    Uniprot ID   -
Organism   Pseudomonas sp. ABY48     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5516836..5528182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN079_RS24775 (ACN079_24775) pgeF 5517047..5517772 (-) 726 WP_420232249.1 peptidoglycan editing factor PgeF -
  ACN079_RS24780 (ACN079_24780) rluD 5517769..5518731 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACN079_RS24785 (ACN079_24785) - 5518882..5519898 (+) 1017 WP_420232250.1 outer membrane protein assembly factor BamD -
  ACN079_RS24790 (ACN079_24790) - 5520024..5520260 (+) 237 WP_420232251.1 PP0621 family protein -
  ACN079_RS24795 (ACN079_24795) pilS 5520250..5521839 (+) 1590 WP_420232252.1 two-component system sensor histidine kinase NtrB Regulator
  ACN079_RS24800 (ACN079_24800) pilR 5521836..5523182 (+) 1347 WP_420232253.1 sigma-54-dependent transcriptional regulator Regulator
  ACN079_RS24805 (ACN079_24805) - 5523264..5523629 (-) 366 WP_420232254.1 DUF6124 family protein -
  ACN079_RS24810 (ACN079_24810) - 5524177..5525088 (+) 912 WP_420232255.1 LysR substrate-binding domain-containing protein -
  ACN079_RS24815 (ACN079_24815) - 5525192..5526085 (+) 894 WP_420232256.1 NAD-dependent epimerase/dehydratase family protein -
  ACN079_RS24820 (ACN079_24820) - 5526220..5527665 (-) 1446 WP_420232257.1 SulP family inorganic anion transporter -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50000.31 Da        Isoelectric Point: 5.7731

>NTDB_id=1108435 ACN079_RS24800 WP_420232253.1 5521836..5523182(+) (pilR) [Pseudomonas sp. ABY48]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIEKLARSQA
PVYISGESGSGKELVARLIHEQGPRANQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDSEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGSSASEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1108435 ACN079_RS24800 WP_420232253.1 5521836..5523182(+) (pilR) [Pseudomonas sp. ABY48]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAACGTTACCCACAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCTGGCGCCTTCGATTTTCTGACCAA
GCCGGTTGACCTGGGCCGGCTGCGGGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACCACCC
TCGAGCGCAGCCTGCTGGGCAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCAGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAAGGCCCCCGTGCCAA
CCAAGGCTTTGTGCCGGTCAATTGTGGGGCAATTCCCACAGAGCTGATGGAAAGCGAGTTTTTCGGCCACCGAAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCCTGTTCCTCGATGAAGTGGCC
GACCTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGGGCGATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAGCAGGA
AGAAGTGGTGGATGTGCGAATCCTCTGCGCCACCCACAAGGATCTGGACAGCGAAGTGGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGACTGAACGTCATCGAACTGCGCGTGCCGCCCCTGCGCGAACGCCGCGAAGACATCGAGCTGCTGGCC
AACCACATGCTCCAGCGTCTGGCAGCCAATACCGGCAGTCCACCGGTCAGATTGCATCCCCAGGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGGGAATTGGAGAACATGCTCGAACGGGCCTATACCCTTTGCGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGTCTGGCCGAGGGCAGTAGTGCTAGCGAGGCGGGCAACCCCGACTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGTAAGCTCATCCTCCAGGCATTGGAGGAAACCCGCTGGAACCGCACGGCGGC
TGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.505

99.107

0.788
  pilR Acinetobacter baumannii strain A118

50.109

100

0.513

Multiple sequence alignment