Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACN079_RS24795 Genome accession   NZ_CP184478
Coordinates   5520250..5521839 (+) Length   529 a.a.
NCBI ID   WP_420232252.1    Uniprot ID   -
Organism   Pseudomonas sp. ABY48     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5515250..5526839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN079_RS24775 (ACN079_24775) pgeF 5517047..5517772 (-) 726 WP_420232249.1 peptidoglycan editing factor PgeF -
  ACN079_RS24780 (ACN079_24780) rluD 5517769..5518731 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACN079_RS24785 (ACN079_24785) - 5518882..5519898 (+) 1017 WP_420232250.1 outer membrane protein assembly factor BamD -
  ACN079_RS24790 (ACN079_24790) - 5520024..5520260 (+) 237 WP_420232251.1 PP0621 family protein -
  ACN079_RS24795 (ACN079_24795) pilS 5520250..5521839 (+) 1590 WP_420232252.1 two-component system sensor histidine kinase NtrB Regulator
  ACN079_RS24800 (ACN079_24800) pilR 5521836..5523182 (+) 1347 WP_420232253.1 sigma-54-dependent transcriptional regulator Regulator
  ACN079_RS24805 (ACN079_24805) - 5523264..5523629 (-) 366 WP_420232254.1 DUF6124 family protein -
  ACN079_RS24810 (ACN079_24810) - 5524177..5525088 (+) 912 WP_420232255.1 LysR substrate-binding domain-containing protein -
  ACN079_RS24815 (ACN079_24815) - 5525192..5526085 (+) 894 WP_420232256.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58851.63 Da        Isoelectric Point: 7.1690

>NTDB_id=1108434 ACN079_RS24795 WP_420232252.1 5520250..5521839(+) (pilS) [Pseudomonas sp. ABY48]
MIAEASSPREKQAQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRGRVGLLIAAVATIGIVGSTFLLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVTGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQRID
DYCTALVERLQLWLNNPSLRPPSLTVTGTGLTLQPSFIALGHDDQQQFLVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNNADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRAWLDQFVRQARESIAEH
QHLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQTEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1108434 ACN079_RS24795 WP_420232252.1 5520250..5521839(+) (pilS) [Pseudomonas sp. ABY48]
GTGATCGCTGAGGCCTCAAGCCCGCGCGAAAAACAGGCGCAGCGCCTGCTGCGTCTTTATCACCTGTACCGCCTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAAACTGGACAACCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAGAACACGCGCCGCCCCGCCCGGCTGTTC
GGCCTGGCACTCACCGACGTTCTGCTGCTTTCGTGGCTGTTCTTCGCCGCGGGCGGTGTGCCCAGTGCCATCGGCAATCT
GCTCATTGTCTCGGTCGCCATCGGCAATACGCTGTTGCGAGGCCGGGTCGGTCTGTTGATCGCCGCTGTCGCCACGATCG
GTATCGTCGGGTCGACTTTCCTCCTCGGCCTGAGCGACTCAAACCGTCCCAGCAGTTATTTGCAAGCCGGCACCCTGGGG
GCACTGTGTTTTGCCGCCGCCCTGCTGGTGCAAGGCCTGACCCGGCGATTGGAAGCCAGTGAAACCCTGGCCGAGCAACG
GGCCAGCGAGGTGACCGGCCTCGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACC
GCGAGCGGCGCGTGCAATTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCACGACCTGGTCGGCCAGCGGATCGAT
GACTATTGCACCGCCCTGGTCGAACGCCTGCAATTGTGGCTGAACAACCCCAGCCTGCGCCCCCCGAGCCTGACCGTGAC
CGGCACAGGCCTGACCCTGCAACCGAGCTTCATCGCCTTGGGGCATGACGATCAGCAACAGTTCCTGGTATTCCTTGAGG
ACCTGGCCCAGGTTGCCCAGCAGGCCCAGCAACTGAAACTCGCCTCCCTCGGACGCCTCACCGCTGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGTGCCATCAGCCACGCAGCGCAATTACTGCGCGAATCCGAGGAACTGAACAACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGACCACGCCGCAACGCCTGGACCTGCGGGCCTGGCTCGACCAGTTCGTCCGGCAGGCCCGCGAAAGCATCGCCGAGCAC
CAGCACTTGCACCTGAGCATCGACCCGGGCGACTACACCACACTGATGGACCCCGACCAGTTGACCCAGGTACTCGACAA
CCTGCTGCGTAACGCCTGGCGCCACAGCGCCATGGCCCACGAACAGACCGAGGCCTGGCTGAAACTGTTCATCGACCCCC
ACAGCCAGCTGTCGACACTGGACATCATCGACAACGGCCCCGGTGTAACCCCCGAGCAGCAGGCGCATTTGTTCGAACCC
TTCTTTACCACCAGCAGCCAAGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.227

99.811

0.601

Multiple sequence alignment