Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACN99C_RS19105 Genome accession   NZ_CP184345
Coordinates   4217118..4219331 (-) Length   737 a.a.
NCBI ID   WP_121161942.1    Uniprot ID   -
Organism   Pseudomonas alloputida strain CBMAL1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4212118..4224331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN99C_RS19070 (ACN99C_19070) murB 4212469..4213488 (-) 1020 WP_121161938.1 UDP-N-acetylmuramate dehydrogenase -
  ACN99C_RS19075 (ACN99C_19075) - 4213485..4213949 (-) 465 WP_121161940.1 low molecular weight protein-tyrosine-phosphatase -
  ACN99C_RS19080 (ACN99C_19080) kdsB 4213949..4214713 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACN99C_RS19085 (ACN99C_19085) - 4214710..4214895 (-) 186 WP_003247142.1 Trm112 family protein -
  ACN99C_RS19090 (ACN99C_19090) lpxK 4214940..4215941 (-) 1002 WP_420170436.1 tetraacyldisaccharide 4'-kinase -
  ACN99C_RS19095 (ACN99C_19095) - 4215941..4216375 (-) 435 WP_014591937.1 ExbD/TolR family protein -
  ACN99C_RS19100 (ACN99C_19100) exbB 4216372..4217007 (-) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACN99C_RS19105 (ACN99C_19105) comA 4217118..4219331 (-) 2214 WP_121161942.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACN99C_RS19110 (ACN99C_19110) - 4219474..4219986 (+) 513 Protein_3741 DUF2062 domain-containing protein -
  ACN99C_RS19115 (ACN99C_19115) - 4219990..4220769 (-) 780 WP_003247128.1 ABC transporter permease -
  ACN99C_RS19120 (ACN99C_19120) - 4220766..4221698 (-) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  ACN99C_RS19125 (ACN99C_19125) - 4221832..4222455 (-) 624 WP_010952921.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79485.44 Da        Isoelectric Point: 10.4819

>NTDB_id=1108282 ACN99C_RS19105 WP_121161942.1 4217118..4219331(-) (comA) [Pseudomonas alloputida strain CBMAL1]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAHGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPDGLLNPHGPDREAQLLARRVGATG
TVKAGHLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLLALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLTGVGEALLWLAGGLLDVLFRGLALVAQQRPAWMPPALPLWAWLLVCLGTLLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAG
AIARGLPIKRIIGGEALVDIPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
VVEGVRGQRRFWRVRGE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=1108282 ACN99C_RS19105 WP_121161942.1 4217118..4219331(-) (comA) [Pseudomonas alloputida strain CBMAL1]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTCTGGCCGCTGGGTTGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGTACTGCACACGGTGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGGACGGGCTGCTGAACCCGCATGGGCCCGACCGTGAAGCGCAGTTGCTGGCGCGACGGGTGGGCGCGACGGGT
ACGGTCAAGGCGGGGCATTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCACTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGACAGGCAGCGCTGGTGGCCCTGGTGCTTGGCGATGGTGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTGCCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCTGGCGGTGGGGTGCCAGTGCAGCGGGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCGTTTTTTCCGTTGCTTCTTGCACTGGTCGCCGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCTCGGTTGGGTGG
TTGGCGGCCCTGGCAGGCCTGGACACGAGCGCAATGGGTGATCGCTGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
CTGGGCACGCTGATGTTGCCGCTGACGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGATGCCGCCGGCCCTGCCGTTGTGGGCCTGGCTGCTGGTAT
GTCTGGGTACGCTGTTGGTTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTGCCCCGGGAGCCGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGATGTTGGCCAGGGGCTGGCGGTGCTATTGCG
TACGCGGCATCACAGCCTGCTCTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACCTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGTTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCACGCCGATCATGCGGGCGGGGCCGGA
GCCATTGCGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCACTGGTTGATATTCCGTTGCAGCCTTGTGCCAG
TGGCGAGCAATGGGATTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGTGGACGGGCAGAGTAGTAATGACCGTTCCT
GTGTCTTGTTGGTGGAAGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAACGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCACGTGCAGGTGGTCG
AACGGTATGGGCGGCATGGGGTGGTGATGCATGATACGGCGGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GTAGTCGAGGGGGTTAGGGGGCAGCGGCGGTTCTGGCGGGTTCGAGGGGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(12-165)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.611

97.693

0.573
  comA Ralstonia pseudosolanacearum GMI1000

34.566

100

0.368

Multiple sequence alignment