Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACN99C_RS19100 Genome accession   NZ_CP184345
Coordinates   4216372..4217007 (-) Length   211 a.a.
NCBI ID   WP_026031862.1    Uniprot ID   A0AA34WU07
Organism   Pseudomonas alloputida strain CBMAL1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4211372..4222007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN99C_RS19070 (ACN99C_19070) murB 4212469..4213488 (-) 1020 WP_121161938.1 UDP-N-acetylmuramate dehydrogenase -
  ACN99C_RS19075 (ACN99C_19075) - 4213485..4213949 (-) 465 WP_121161940.1 low molecular weight protein-tyrosine-phosphatase -
  ACN99C_RS19080 (ACN99C_19080) kdsB 4213949..4214713 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACN99C_RS19085 (ACN99C_19085) - 4214710..4214895 (-) 186 WP_003247142.1 Trm112 family protein -
  ACN99C_RS19090 (ACN99C_19090) lpxK 4214940..4215941 (-) 1002 WP_420170436.1 tetraacyldisaccharide 4'-kinase -
  ACN99C_RS19095 (ACN99C_19095) - 4215941..4216375 (-) 435 WP_014591937.1 ExbD/TolR family protein -
  ACN99C_RS19100 (ACN99C_19100) exbB 4216372..4217007 (-) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACN99C_RS19105 (ACN99C_19105) comA 4217118..4219331 (-) 2214 WP_121161942.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACN99C_RS19110 (ACN99C_19110) - 4219474..4219986 (+) 513 Protein_3741 DUF2062 domain-containing protein -
  ACN99C_RS19115 (ACN99C_19115) - 4219990..4220769 (-) 780 WP_003247128.1 ABC transporter permease -
  ACN99C_RS19120 (ACN99C_19120) - 4220766..4221698 (-) 933 WP_010952922.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.20 Da        Isoelectric Point: 7.3616

>NTDB_id=1108281 ACN99C_RS19100 WP_026031862.1 4216372..4217007(-) (exbB) [Pseudomonas alloputida strain CBMAL1]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1108281 ACN99C_RS19100 WP_026031862.1 4216372..4217007(-) (exbB) [Pseudomonas alloputida strain CBMAL1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCAGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment