Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACN19N_RS14480 Genome accession   NZ_CP184160
Coordinates   3014414..3015838 (+) Length   474 a.a.
NCBI ID   WP_269238919.1    Uniprot ID   -
Organism   Acinetobacter sp. LF10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3009414..3020838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS14460 (ACN19N_14460) - 3009965..3010732 (-) 768 WP_420001626.1 hypothetical protein -
  ACN19N_RS14465 (ACN19N_14465) pbpG 3010893..3011960 (-) 1068 WP_420001627.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACN19N_RS14470 (ACN19N_14470) - 3012171..3012806 (+) 636 WP_005163158.1 response regulator -
  ACN19N_RS14475 (ACN19N_14475) pilS 3012826..3014391 (+) 1566 WP_293738412.1 sensor histidine kinase Regulator
  ACN19N_RS14480 (ACN19N_14480) pilR 3014414..3015838 (+) 1425 WP_269238919.1 sigma-54-dependent transcriptional regulator Regulator
  ACN19N_RS14485 (ACN19N_14485) - 3015880..3017055 (-) 1176 WP_269229052.1 S41 family peptidase -
  ACN19N_RS14490 (ACN19N_14490) gpmI 3017065..3018609 (-) 1545 WP_420001628.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACN19N_RS14495 (ACN19N_14495) - 3018728..3019222 (-) 495 WP_420001629.1 putative molybdenum carrier protein -
  ACN19N_RS14500 (ACN19N_14500) lptG 3019237..3020307 (-) 1071 WP_420001630.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53131.14 Da        Isoelectric Point: 6.1058

>NTDB_id=1108031 ACN19N_RS14480 WP_269238919.1 3014414..3015838(+) (pilR) [Acinetobacter sp. LF10]
MAIKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAAESALENKLLIGRSTPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LASHFIQKISQEWEVSVKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSPIATPIVSFSTQ
DENDHAISTSPMGSKKLPPEGLELYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1108031 ACN19N_RS14480 WP_269238919.1 3014414..3015838(+) (pilR) [Acinetobacter sp. LF10]
ATGGCAATTAAACAACCACTCGTCTTACTCGTAGACGATGAAGAAGACTTATGTCTTTTAATGCAAATGACGCTCGCACG
AATGGGCATTAAAACTCATCTTGCCTATCGCGTAGAGCAAGCAAAAAAATTCTTTACCGAGTTTCAGTACGATGCTTGTT
TAACAGATTTGAATCTCCCAGATGGCAACGGTCTGGACTTGGTTAAACATGTCACACAAAACTATCCCAACACACCGATT
GCAGTATTAACAGCGTATGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTCAGTAAACC
TGTCAATCAAACTCACCTAGATCAATTGATTCAAAAAGCATTGAATCGACCACAGCCTGAACAAGAAGCTGCTGAGAGTG
CACTAGAAAATAAACTTCTGATTGGTCGTTCTACGCCTATTCAACAATTACGAATTGCTTTAAAGAAAATTGCTCGATCT
CAAGCCCCTGTCTTTATTACCGGTGAATCAGGGACAGGAAAAGAAGTTGTTGCCAATTTAGTTCATCGTCTGAGTAATCG
TAGCGAAGGACCTTTTATTGCGATCAACTGTGGTGCTATTCCAACAGAGTTAATGGAAAGTGAATTATTTGGTCATAAAA
AAGGCAGCTTCACAGGCGCAACCCAAGACAAACAAGGTCTCATTCTTTCCGCACATGGGGGTAGTTTATTCTTAGATGAG
ATCGCTGAATTACCCTTAAGTATGCAGGTAAAACTGCTTCGTGCTGTACAAGAAAAGAAAATTCGCCCTGTTGGCTCAGA
TCAAGAAATTGATGTTGATTTCCGTGTCATCAGTGCAAGTCATCAAGATCTCGAATTACTAGTACAACAAGGTCGCTTCA
GACAAGATTTATTTTTCCGTATACATGTAATGGATATTGTGCTTCCACCATTACGCGAACGTGGACAAGATATTTTACTA
CTTGCAAGCCACTTTATTCAAAAGATCAGCCAAGAATGGGAAGTATCGGTTAAAACCCTCTCTTCTCGCGCAGAACAGTT
CTTATTACAGCAATATTTCCCAGGTAATGTTCGTGAACTTCGCAACATTATTGAACGTGCAATTACGCTCAGTGATGATG
AAACTATTGATCTAGCCCATCTTCAAACAGCTCCTCTACGTAGCCCTATTGCAACGCCAATAGTCTCATTTTCAACACAA
GATGAAAATGATCATGCGATAAGCACTAGCCCTATGGGTTCTAAAAAGCTACCACCTGAAGGACTGGAGCTCTATTTAGA
AAATATTGAAAAAGAAATTCTTCTCAATGCACTGAATTTAACCCATTGGAATCGAACTTTAGCGGCTAAAAAATTAGGAA
TGACCTTCCGTTCTTTACGCTATCGTTTGAAGAAGTTTGGTTTAGATACCGAAGATGATGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.544

100

0.835
  pilR Pseudomonas aeruginosa PAK

50.216

97.468

0.489

Multiple sequence alignment