Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACN19N_RS14475 Genome accession   NZ_CP184160
Coordinates   3012826..3014391 (+) Length   521 a.a.
NCBI ID   WP_293738412.1    Uniprot ID   -
Organism   Acinetobacter sp. LF10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3007826..3019391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS14455 (ACN19N_14455) thrC 3008757..3009896 (+) 1140 WP_420001625.1 threonine synthase -
  ACN19N_RS14460 (ACN19N_14460) - 3009965..3010732 (-) 768 WP_420001626.1 hypothetical protein -
  ACN19N_RS14465 (ACN19N_14465) pbpG 3010893..3011960 (-) 1068 WP_420001627.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACN19N_RS14470 (ACN19N_14470) - 3012171..3012806 (+) 636 WP_005163158.1 response regulator -
  ACN19N_RS14475 (ACN19N_14475) pilS 3012826..3014391 (+) 1566 WP_293738412.1 sensor histidine kinase Regulator
  ACN19N_RS14480 (ACN19N_14480) pilR 3014414..3015838 (+) 1425 WP_269238919.1 sigma-54-dependent transcriptional regulator Regulator
  ACN19N_RS14485 (ACN19N_14485) - 3015880..3017055 (-) 1176 WP_269229052.1 S41 family peptidase -
  ACN19N_RS14490 (ACN19N_14490) gpmI 3017065..3018609 (-) 1545 WP_420001628.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACN19N_RS14495 (ACN19N_14495) - 3018728..3019222 (-) 495 WP_420001629.1 putative molybdenum carrier protein -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59334.26 Da        Isoelectric Point: 6.7715

>NTDB_id=1108030 ACN19N_RS14475 WP_293738412.1 3012826..3014391(+) (pilS) [Acinetobacter sp. LF10]
MLGKIASSVSQTVYRLGIWYSGYRLIISISLILIYLLTAEQLSTNYDYPFLYFYTLVCYICINIFQLFILKLIPLHVTKQ
LIFVFIVDIACLSIITFSAGGPNLQLSLLYVIIIFSSAILLNAHLSLIVTLFAVIMVVYQRFLGNFFDYNNLNNLGNSAF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDHSNHIVLSNPAANTLLGIQIPVSPE
KTPLLKWQPDLFELIKFSDLEDGEEFSFESQQSPYTINVRVKHLIVPEQSLILLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKESDSHQQEMLCRMISKQARRIDNIVQDTLGMARNKPTEPQVIQLADFFESLLNEDLVDAK
HMIKLNLAERINILFDEKQLRQVLINLIRNALRHNAADAQFIEVNVDLKDGRTCIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHTFCEANHAKLTYVERQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1108030 ACN19N_RS14475 WP_293738412.1 3012826..3014391(+) (pilS) [Acinetobacter sp. LF10]
ATGTTGGGAAAAATTGCGTCATCAGTGTCCCAAACCGTTTATCGGCTCGGAATTTGGTATAGTGGATATCGACTGATTAT
TTCAATCAGTCTAATTCTTATTTACTTACTCACTGCGGAACAGCTTTCCACCAACTACGATTACCCTTTTTTATATTTCT
ATACGTTAGTCTGCTATATCTGCATCAACATTTTTCAACTCTTCATACTCAAGCTCATTCCATTACATGTTACGAAACAA
CTCATTTTCGTCTTTATTGTGGATATTGCCTGCTTGAGTATCATTACCTTCTCTGCGGGAGGACCCAACTTACAACTCAG
TTTGCTGTATGTGATTATTATTTTCTCATCTGCAATTCTATTAAATGCCCACCTATCTCTCATCGTGACGCTTTTTGCTG
TTATTATGGTGGTTTACCAGCGTTTCCTTGGCAATTTCTTCGATTACAATAATTTAAATAACTTAGGCAATAGCGCATTT
CTTGCCTTTTTATTTTTTGTGGTTCATGCAATTGGTCGTATTGCCGTTCAAAGATTTAAGATTTTAGAAACACTCACTTT
TCATCAGTCTATTGAAATTCATCAGCTGCAAAATATTAACCGCTATATTTTGGAGCAAATCGAAGATGGCTATTTGGTAT
TAGATCATAGCAACCATATTGTGTTGAGTAACCCAGCAGCCAACACATTATTAGGCATTCAAATCCCTGTTTCTCCAGAA
AAAACTCCTCTGCTCAAATGGCAACCTGATTTATTTGAACTGATTAAATTTAGTGATTTAGAAGATGGTGAAGAATTTAG
TTTTGAATCACAACAAAGTCCTTATACGATCAATGTCCGTGTTAAACACCTAATCGTCCCCGAACAATCATTAATTTTAC
TTATCTTGAAAGATGCACAAAAACTCACGCAACAAGTTCAACAATTAAAACTGGCCGCGCTTGGTCAACTCTCTGCAAGT
ATTGCACATGAAATTCGCAACCCTTTAGCGGCGATTGTGCAGGCCAATGAATTACTTAAAGAAAGTGATAGTCATCAACA
AGAAATGCTCTGTCGTATGATCAGCAAACAAGCTAGACGTATTGATAATATTGTACAAGACACATTAGGCATGGCACGCA
ACAAACCAACTGAGCCACAAGTCATTCAACTTGCTGATTTTTTTGAAAGCCTATTGAATGAAGATCTAGTCGATGCGAAA
CATATGATTAAACTCAATCTTGCAGAACGAATTAATATTCTTTTTGATGAGAAACAATTACGTCAAGTTTTAATTAATCT
GATTCGAAATGCCCTGCGGCACAATGCAGCTGATGCTCAATTTATTGAAGTGAATGTAGACTTAAAAGATGGCAGAACAT
GTATTGATGTGATTGATTTTGGTACAGGGGTCGCAAAACGAGATATTTCTCAGCTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTATTTGTCTCATACTTTTTGTGAGGCAAATCATGCAAAGCTCACTTACGTAGAGCG
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.504

99.04

0.649

Multiple sequence alignment