Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACN19N_RS06625 Genome accession   NZ_CP184160
Coordinates   1384051..1384758 (-) Length   235 a.a.
NCBI ID   WP_269230142.1    Uniprot ID   A0A9E9NPL2
Organism   Acinetobacter sp. LF10     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1379051..1389758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS06610 (ACN19N_06610) - 1379696..1381279 (+) 1584 WP_420002244.1 5-oxoprolinase/urea amidolyase family protein -
  ACN19N_RS06615 (ACN19N_06615) - 1381272..1382987 (+) 1716 WP_420002245.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha -
  ACN19N_RS06620 (ACN19N_06620) - 1383061..1383837 (-) 777 WP_269230141.1 M48 family metallopeptidase -
  ACN19N_RS06625 (ACN19N_06625) crp 1384051..1384758 (-) 708 WP_269230142.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACN19N_RS06630 (ACN19N_06630) - 1384907..1385329 (+) 423 WP_269230143.1 OsmC family protein -
  ACN19N_RS06635 (ACN19N_06635) - 1385400..1386200 (-) 801 WP_420002362.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACN19N_RS06640 (ACN19N_06640) clpB 1386463..1389042 (+) 2580 WP_420002246.1 ATP-dependent chaperone ClpB -
  ACN19N_RS06645 (ACN19N_06645) - 1389210..1389629 (+) 420 WP_269239478.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26550.10 Da        Isoelectric Point: 4.7361

>NTDB_id=1108014 ACN19N_RS06625 WP_269230142.1 1384051..1384758(-) (crp) [Acinetobacter sp. LF10]
MTSNFSHLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFENNPQRTAEVRTRDICEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLDDNAFSEDEFDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1108014 ACN19N_RS06625 WP_269230142.1 1384051..1384758(-) (crp) [Acinetobacter sp. LF10]
ATGACTTCAAATTTTTCACATCTTAGCACTGATGCTTTGTCTCCAGGTCAATTACCTGAATCAGTTAAAGCATTGCTAAA
ACGTGCTCACATTAATAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACAGAATCAAAATCACTGTACTTAATAT
TAAAAGGTTCAGTATCAATCATATTACGTGAAGACGATGAGCGTGAGATTGTTGTTGCATACCTCAATCCAGGTGATTTC
TTTGGTGAAATGGGGTTGTTTGAAAATAACCCTCAACGTACTGCTGAAGTCCGTACTCGAGATATTTGCGAAATTGCAGA
AATCTCATATGAAAATTTCCACGAACTCAGCAAGCAATATCCTGACCTGAGCTATGCTGTATTTGCTCAGCTTGTTCGCC
GCCTGAAGAATACAACGCGTAAAGTCACTGACTTAGCATTTATCGACGTATCTGGTCGTATTGCTCGTTGTCTAATTGAC
TTATCTGCACAACCTGAGGCAATGATTCTACCGAATGGTCGTCAGATTCGTATTACACGTCAAGAAATTGGTCGTATTGT
GGGTTGTTCACGTGAAATGGTTGGTCGTGTTTTAAAAACACTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACTTCTTTAGATGATAACGCATTTTCTGAAGATGAATTTGATGATGAGGATTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.34

100

0.923
  crp Vibrio cholerae strain A1552

47.596

88.511

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404

Multiple sequence alignment