Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACN19N_RS02660 Genome accession   NZ_CP184160
Coordinates   554845..555273 (+) Length   142 a.a.
NCBI ID   WP_420001917.1    Uniprot ID   -
Organism   Acinetobacter sp. LF10     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 549845..560273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS02645 (ACN19N_02645) - 550851..553157 (+) 2307 WP_269229606.1 RelA/SpoT family protein -
  ACN19N_RS02650 (ACN19N_02650) - 553202..553975 (-) 774 WP_420001915.1 SDR family oxidoreductase -
  ACN19N_RS02655 (ACN19N_02655) mazG 554070..554876 (+) 807 WP_420001916.1 nucleoside triphosphate pyrophosphohydrolase -
  ACN19N_RS02660 (ACN19N_02660) comEA 554845..555273 (+) 429 WP_420001917.1 ComEA family DNA-binding protein Machinery gene
  ACN19N_RS02665 (ACN19N_02665) pcnB 555413..556867 (+) 1455 WP_420001918.1 polynucleotide adenylyltransferase PcnB -
  ACN19N_RS02670 (ACN19N_02670) folK 556864..557352 (+) 489 WP_269229611.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACN19N_RS02675 (ACN19N_02675) panB 557391..558200 (+) 810 WP_269229612.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACN19N_RS02680 (ACN19N_02680) panC 558204..559049 (+) 846 WP_269229613.1 pantoate--beta-alanine ligase -
  ACN19N_RS02685 (ACN19N_02685) rapZ 559073..559924 (+) 852 WP_269229614.1 RNase adapter RapZ -
  ACN19N_RS02690 (ACN19N_02690) - 559921..560190 (+) 270 WP_087545614.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16101.32 Da        Isoelectric Point: 10.2939

>NTDB_id=1108009 ACN19N_RS02660 WP_420001917.1 554845..555273(+) (comEA) [Acinetobacter sp. LF10]
MNLPQPRSKHNLFLFIFLYLGCFSYVDAQPFDQSYEKWKAQQQARDQQLAKQPNNNYYLSRPTAQQGSKQVSSSVNIQGD
KISLNQANLQQLQTLNGVGEKKAQAIVEYRQKNGGFKTIDELVNVKGIGPKLLEKNKARLGL

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1108009 ACN19N_RS02660 WP_420001917.1 554845..555273(+) (comEA) [Acinetobacter sp. LF10]
ATGAATTTGCCGCAACCACGCAGCAAACATAATCTTTTTCTATTCATCTTTTTATATTTAGGGTGTTTTTCATATGTAGA
TGCGCAGCCTTTTGATCAGTCCTATGAAAAATGGAAAGCGCAACAACAGGCACGTGATCAGCAATTGGCGAAGCAACCAA
ACAATAATTATTATTTATCAAGACCCACGGCACAACAAGGTTCAAAGCAAGTTTCATCTTCTGTAAACATTCAAGGAGAT
AAAATTAGTTTGAACCAAGCAAATTTACAGCAGCTACAAACGTTGAATGGCGTGGGTGAGAAAAAAGCTCAGGCAATTGT
TGAATATCGCCAAAAGAATGGTGGTTTTAAAACGATAGATGAGTTGGTCAATGTAAAAGGAATTGGACCCAAATTGCTTG
AGAAAAATAAAGCACGCTTAGGATTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(80-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

52.206

95.775

0.5
  comEA Acinetobacter baumannii D1279779

48.148

95.07

0.458
  comEA Acinetobacter baylyi ADP1

44.853

95.775

0.43

Multiple sequence alignment