Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   ACM5XX_RS17080 Genome accession   NZ_CP183946
Coordinates   3424651..3425814 (-) Length   387 a.a.
NCBI ID   WP_003151385.1    Uniprot ID   -
Organism   Bacillus velezensis strain HKSSLJEBR3     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3419651..3430814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM5XX_RS17050 (ACM5XX_17050) - 3419916..3420335 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACM5XX_RS17055 (ACM5XX_17055) comFC 3420409..3421098 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ACM5XX_RS17060 (ACM5XX_17060) - 3421104..3421388 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACM5XX_RS17065 (ACM5XX_17065) comFA 3421446..3422831 (-) 1386 WP_014305928.1 DEAD/DEAH box helicase Machinery gene
  ACM5XX_RS17070 (ACM5XX_17070) - 3422939..3423787 (-) 849 WP_014305929.1 DegV family protein -
  ACM5XX_RS17075 (ACM5XX_17075) degU 3423885..3424574 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACM5XX_RS17080 (ACM5XX_17080) degS 3424651..3425814 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACM5XX_RS17085 (ACM5XX_17085) - 3426037..3426684 (+) 648 WP_003151384.1 YigZ family protein -
  ACM5XX_RS17090 (ACM5XX_17090) - 3426689..3427903 (+) 1215 WP_014305930.1 LCP family protein -
  ACM5XX_RS17095 (ACM5XX_17095) - 3427993..3429069 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  ACM5XX_RS17100 (ACM5XX_17100) tuaH 3429202..3430398 (-) 1197 WP_069013672.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.82 Da        Isoelectric Point: 7.1378

>NTDB_id=1107267 ACM5XX_RS17080 WP_003151385.1 3424651..3425814(-) (degS) [Bacillus velezensis strain HKSSLJEBR3]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=1107267 ACM5XX_RS17080 WP_003151385.1 3424651..3425814(-) (degS) [Bacillus velezensis strain HKSSLJEBR3]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGGGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAGATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCTACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAACATTCAGAATCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTTGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.325

99.483

0.948

Multiple sequence alignment