Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACM5XX_RS17075 Genome accession   NZ_CP183946
Coordinates   3423885..3424574 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain HKSSLJEBR3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3418885..3429574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM5XX_RS17040 (ACM5XX_17040) - 3419083..3419565 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACM5XX_RS17045 (ACM5XX_17045) flgM 3419580..3419846 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACM5XX_RS17050 (ACM5XX_17050) - 3419916..3420335 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACM5XX_RS17055 (ACM5XX_17055) comFC 3420409..3421098 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ACM5XX_RS17060 (ACM5XX_17060) - 3421104..3421388 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACM5XX_RS17065 (ACM5XX_17065) comFA 3421446..3422831 (-) 1386 WP_014305928.1 DEAD/DEAH box helicase Machinery gene
  ACM5XX_RS17070 (ACM5XX_17070) - 3422939..3423787 (-) 849 WP_014305929.1 DegV family protein -
  ACM5XX_RS17075 (ACM5XX_17075) degU 3423885..3424574 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACM5XX_RS17080 (ACM5XX_17080) degS 3424651..3425814 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACM5XX_RS17085 (ACM5XX_17085) - 3426037..3426684 (+) 648 WP_003151384.1 YigZ family protein -
  ACM5XX_RS17090 (ACM5XX_17090) - 3426689..3427903 (+) 1215 WP_014305930.1 LCP family protein -
  ACM5XX_RS17095 (ACM5XX_17095) - 3427993..3429069 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1107266 ACM5XX_RS17075 WP_003219701.1 3423885..3424574(-) (degU) [Bacillus velezensis strain HKSSLJEBR3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1107266 ACM5XX_RS17075 WP_003219701.1 3423885..3424574(-) (degU) [Bacillus velezensis strain HKSSLJEBR3]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment