Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACM5XX_RS17065 Genome accession   NZ_CP183946
Coordinates   3421446..3422831 (-) Length   461 a.a.
NCBI ID   WP_014305928.1    Uniprot ID   -
Organism   Bacillus velezensis strain HKSSLJEBR3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3416446..3427831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM5XX_RS17030 (ACM5XX_17030) flgL 3416621..3417538 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACM5XX_RS17035 (ACM5XX_17035) flgK 3417550..3419067 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  ACM5XX_RS17040 (ACM5XX_17040) - 3419083..3419565 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACM5XX_RS17045 (ACM5XX_17045) flgM 3419580..3419846 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACM5XX_RS17050 (ACM5XX_17050) - 3419916..3420335 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACM5XX_RS17055 (ACM5XX_17055) comFC 3420409..3421098 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ACM5XX_RS17060 (ACM5XX_17060) - 3421104..3421388 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACM5XX_RS17065 (ACM5XX_17065) comFA 3421446..3422831 (-) 1386 WP_014305928.1 DEAD/DEAH box helicase Machinery gene
  ACM5XX_RS17070 (ACM5XX_17070) - 3422939..3423787 (-) 849 WP_014305929.1 DegV family protein -
  ACM5XX_RS17075 (ACM5XX_17075) degU 3423885..3424574 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACM5XX_RS17080 (ACM5XX_17080) degS 3424651..3425814 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACM5XX_RS17085 (ACM5XX_17085) - 3426037..3426684 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52468.90 Da        Isoelectric Point: 10.1677

>NTDB_id=1107265 ACM5XX_RS17065 WP_014305928.1 3421446..3422831(-) (comFA) [Bacillus velezensis strain HKSSLJEBR3]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKGRQELLVWAVCGSGKTEMLFPGIEY
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1107265 ACM5XX_RS17065 WP_014305928.1 3421446..3422831(-) (comFA) [Bacillus velezensis strain HKSSLJEBR3]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGGGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTAT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629

Multiple sequence alignment