Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLKMZ_RS02260 Genome accession   NZ_CP183909
Coordinates   475308..475934 (-) Length   208 a.a.
NCBI ID   WP_180058380.1    Uniprot ID   -
Organism   Acinetobacter gandensis strain M1_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470308..480934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMZ_RS02225 mlaE 470603..471382 (+) 780 WP_067762937.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACLKMZ_RS02230 - 471382..472059 (+) 678 WP_180058377.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACLKMZ_RS02235 - 472075..472710 (+) 636 WP_067762935.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACLKMZ_RS02240 - 472723..473010 (+) 288 WP_411691313.1 STAS domain-containing protein -
  ACLKMZ_RS02245 - 473116..474129 (-) 1014 WP_067762933.1 CorA family divalent cation transporter -
  ACLKMZ_RS02250 - 474286..474888 (+) 603 WP_180058378.1 TIGR00730 family Rossman fold protein -
  ACLKMZ_RS02255 - 474892..475311 (+) 420 WP_180058379.1 NUDIX hydrolase -
  ACLKMZ_RS02260 comF 475308..475934 (-) 627 WP_180058380.1 ComF family protein Machinery gene
  ACLKMZ_RS02265 recG 475941..477986 (-) 2046 WP_411691312.1 ATP-dependent DNA helicase RecG -
  ACLKMZ_RS02270 - 478020..478793 (+) 774 WP_411691311.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23948.03 Da        Isoelectric Point: 9.5896

>NTDB_id=1107161 ACLKMZ_RS02260 WP_180058380.1 475308..475934(-) (comF) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MNMLLQGLHKLVGKPPCVLCQLSPAHRHSVCQDCWSNLPWNQEMIHRQELNIIAASEYRYPMDRIIQQFKYEQQLQFQTL
LAGSLICKKLPRVQAIVPMPISQERLVERGFNQSVLIAQQLARQLNTPVWQPIIRQHQHAQKGLSRVERLEGIHQQFKID
SRIQTRYRKVLIIDDVVTTGSSVKALTEQLESMGCQQIHIACLAAAKI

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1107161 ACLKMZ_RS02260 WP_180058380.1 475308..475934(-) (comF) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGAATATGCTATTGCAAGGACTACACAAGCTGGTTGGCAAGCCACCTTGTGTGCTGTGCCAACTGAGTCCTGCGCACCG
ACACAGTGTCTGTCAGGACTGCTGGAGCAATCTACCATGGAACCAAGAGATGATTCATCGACAGGAGCTCAATATTATTG
CAGCCAGCGAATATCGTTATCCAATGGATCGTATTATTCAACAATTCAAATATGAACAACAATTACAATTTCAGACACTC
TTGGCAGGCAGCTTAATTTGCAAAAAACTACCTCGTGTACAAGCGATTGTACCGATGCCAATTTCACAGGAACGGTTAGT
TGAACGTGGCTTTAACCAATCTGTACTGATTGCACAACAGCTTGCCAGACAGTTAAACACTCCCGTGTGGCAACCGATCA
TTCGACAGCACCAACATGCTCAAAAAGGGCTTTCACGTGTTGAACGCTTAGAGGGTATCCATCAACAATTCAAAATAGAT
TCACGCATTCAAACGCGTTATCGCAAAGTCCTCATTATTGATGATGTCGTGACCACTGGCAGCTCTGTTAAAGCATTAAC
CGAACAGCTTGAAAGTATGGGTTGCCAGCAGATTCATATTGCCTGTCTTGCTGCAGCTAAAATTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.021

91.827

0.514
  comF Acinetobacter baumannii D1279779

56.021

91.827

0.514

Multiple sequence alignment