Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ACLKMZ_RS01955 Genome accession   NZ_CP183909
Coordinates   417873..418325 (+) Length   150 a.a.
NCBI ID   WP_411691336.1    Uniprot ID   -
Organism   Acinetobacter gandensis strain M1_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412873..423325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMZ_RS01930 - 413993..414325 (+) 333 WP_411691343.1 hypothetical protein -
  ACLKMZ_RS01935 - 414341..414592 (+) 252 WP_411691342.1 hypothetical protein -
  ACLKMZ_RS01940 - 414577..414972 (+) 396 WP_411691340.1 hypothetical protein -
  ACLKMZ_RS01945 - 414912..415814 (+) 903 WP_411691338.1 hypothetical protein -
  ACLKMZ_RS01950 - 415766..417862 (+) 2097 WP_411691337.1 hypothetical protein -
  ACLKMZ_RS01955 comE 417873..418325 (+) 453 WP_411691336.1 type IV pilin protein Machinery gene
  ACLKMZ_RS01960 - 418334..418789 (+) 456 WP_180058829.1 type IV pilin protein -
  ACLKMZ_RS01965 rpsP 418933..419190 (+) 258 WP_005013161.1 30S ribosomal protein S16 -
  ACLKMZ_RS01970 rimM 419209..419757 (+) 549 WP_180058826.1 ribosome maturation factor RimM -
  ACLKMZ_RS01975 trmD 419800..420546 (+) 747 WP_411691335.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACLKMZ_RS01980 rplS 420744..421118 (+) 375 WP_180058827.1 50S ribosomal protein L19 -
  ACLKMZ_RS01985 - 421187..422172 (-) 986 Protein_376 esterase/lipase family protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16538.96 Da        Isoelectric Point: 10.0004

>NTDB_id=1107160 ACLKMZ_RS01955 WP_411691336.1 417873..418325(+) (comE) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MKRTNFFRTGFTLIELMVVVVIVAIFAAIAIPSYQEYIRRSQATQAQDQIQQIAMALDRHKSRNFNYQGFVMPTGMNVQP
RGATGAAVKYNFTVVSGVGGQTWLITALATDPKNYNFLMSSTGVRCKNKTANLIDSASISCGTENTGREE

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1107160 ACLKMZ_RS01955 WP_411691336.1 417873..418325(+) (comE) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGAAAAGAACAAATTTTTTTCGAACAGGCTTTACATTAATCGAGTTGATGGTGGTGGTGGTGATTGTGGCAATTTTTGC
CGCAATCGCAATTCCATCTTATCAAGAGTACATTCGTCGGTCTCAGGCAACGCAAGCTCAAGATCAAATACAACAAATTG
CTATGGCATTAGATCGGCATAAATCTAGAAATTTCAATTATCAAGGTTTTGTAATGCCAACAGGTATGAATGTGCAGCCT
AGAGGTGCAACGGGGGCTGCTGTAAAATATAATTTTACAGTAGTATCAGGTGTTGGTGGTCAGACATGGTTAATTACAGC
TTTGGCTACAGATCCAAAGAATTACAATTTTTTAATGTCTAGTACTGGTGTACGGTGTAAAAATAAAACAGCTAATCTTA
TTGATTCAGCATCTATTTCATGTGGCACAGAAAATACGGGGCGTGAAGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-30)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

44.785

100

0.487
  pilY2 Acinetobacter baumannii D1279779

45.033

100

0.453

Multiple sequence alignment