Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   ACLKM0_RS09330 Genome accession   NZ_CP183907
Coordinates   1941280..1943682 (-) Length   800 a.a.
NCBI ID   WP_411688555.1    Uniprot ID   -
Organism   Acinetobacter indicus strain M3_NDM     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1936600..1944451 1941280..1943682 within 0


Gene organization within MGE regions


Location: 1936600..1944451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS09305 purM 1936600..1937670 (+) 1071 WP_005176576.1 phosphoribosylformylglycinamidine cyclo-ligase -
  ACLKM0_RS09310 purN 1937677..1938306 (+) 630 WP_016660003.1 phosphoribosylglycinamide formyltransferase -
  ACLKM0_RS09315 - 1938383..1939186 (-) 804 WP_411688510.1 alpha/beta fold hydrolase -
  ACLKM0_RS09320 sppA 1939183..1940208 (-) 1026 WP_411688509.1 signal peptide peptidase SppA -
  ACLKM0_RS09325 - 1940339..1941283 (+) 945 WP_411688508.1 lysophospholipid acyltransferase family protein -
  ACLKM0_RS09330 comA/comEC 1941280..1943682 (-) 2403 WP_411688555.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLKM0_RS09335 lolD 1943768..1944451 (-) 684 WP_411688507.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 91519.53 Da        Isoelectric Point: 7.2695

>NTDB_id=1107130 ACLKM0_RS09330 WP_411688555.1 1941280..1943682(-) (comA/comEC) [Acinetobacter indicus strain M3_NDM]
MFKIMGAGWIVGIACMGKTLWPMLDFPLWLSGLLLIILLLQQIAALHWSHLGIQLINTCVAFVITFLLGLNFAQNQLQER
LIFRELTRQPAEVVVYVQQINQLGSSQLRQPVQVLNRHSQPVQWLALLPAEQELQLGRYYRLQGQTLPAHSFAVPGAFDV
EQWYLQQNIMSGFQVQSIVELTESELYRLEFGVHLRQHQQLWPQFKLWIETQRLQIRDFIQQQALQHPGLILALLTGDKS
LLDEATEQQFQRFGMSHLLAISGPHVLIFAAMLCFVLQRLVTRYWPELYARLPRSYLLLLPFMGCVFVYCAYVGFEIPAL
RTLLICLVAGACLLLKQPIQPLSLLIGSASLLLLLDPLSVLSAAFWLSYGACFVLLRIYQTLRQQPVHPQQTLMQKLWQG
FRLLFESQWKIFIALFPLMIIFFKQIAWIAPLSNLLAIPWIGLVTVPLDILAGLSFYLAEPLSQLLFQLNDLALSLLLGC
LQLLDLLFVPQLIPVALSPPMLLSLVLGLMILFLPAGLVPKAWSALCLLPLLFQDQFSRQVELSVLDVGQGQAIFLRYRE
HSMMIDMGGHYDEQKWSIGRQIIQPFLSVKGVQQLDYLWLTHLDQDHSGAYQTLKPQLQVQQVYANAQLEVNPHSHFDYC
QQGQQWQWQPGIQIQVLSPKPEQLNPVEQQKNESSCVLLVEFAQAQPYSRFLLMGDAGWPTEYQLLQDYPDLKVDVLVLG
HHGSRHSSSYQFLKQLEPKLAIASAGLNNRYGHPSTQVQARLNALKIPLWQTAQQGSIQFYPTENEVLPYRHTRVWLLRD

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=1107130 ACLKM0_RS09330 WP_411688555.1 1941280..1943682(-) (comA/comEC) [Acinetobacter indicus strain M3_NDM]
ATGTTCAAAATCATGGGTGCCGGCTGGATTGTAGGTATTGCCTGTATGGGCAAAACGCTATGGCCGATGCTGGATTTCCC
GCTCTGGTTGTCAGGCCTGTTACTGATTATCCTGCTTTTACAGCAAATAGCTGCTTTACATTGGTCCCATCTGGGCATCC
AATTGATTAATACCTGTGTGGCATTTGTCATTACATTTTTGTTGGGGCTGAATTTTGCCCAAAACCAGTTGCAAGAGCGG
TTGATATTTCGTGAACTGACCCGCCAGCCGGCAGAGGTGGTGGTCTATGTCCAGCAAATCAATCAGCTGGGTAGCAGCCA
GCTCCGGCAACCGGTTCAGGTGCTGAACCGGCATAGCCAGCCGGTGCAATGGCTGGCCTTGCTGCCGGCTGAACAGGAAC
TACAGCTGGGGCGTTATTATCGTTTACAGGGGCAGACCTTGCCGGCGCACAGTTTTGCCGTTCCGGGTGCGTTTGATGTA
GAGCAGTGGTATCTCCAGCAAAATATCATGAGCGGCTTTCAGGTCCAGTCGATTGTGGAACTGACTGAATCGGAACTGTA
TCGGCTGGAATTTGGGGTACATTTAAGACAGCATCAGCAACTCTGGCCGCAATTTAAATTGTGGATCGAAACACAGCGTT
TACAGATTCGTGACTTTATCCAGCAGCAGGCATTGCAGCATCCCGGCTTAATACTGGCACTGCTGACTGGCGATAAAAGT
TTACTCGATGAAGCCACCGAGCAGCAGTTTCAGCGTTTCGGGATGAGTCATTTGCTGGCGATTTCCGGGCCGCATGTGCT
GATTTTTGCCGCCATGCTGTGTTTTGTGCTGCAGCGCCTGGTCACTCGCTATTGGCCCGAATTATATGCGCGATTGCCCC
GAAGTTATCTGCTGTTGCTGCCGTTTATGGGCTGTGTATTTGTATATTGTGCCTATGTTGGGTTTGAAATTCCTGCGCTC
AGGACTTTACTGATTTGTCTGGTGGCAGGCGCCTGCCTGTTGCTAAAGCAGCCGATACAGCCGCTGTCTTTGCTGATTGG
TAGTGCTTCGTTATTGCTGCTGCTTGATCCGTTGAGTGTGCTGTCGGCGGCATTCTGGCTGTCTTATGGCGCCTGCTTTG
TGCTGTTAAGGATTTACCAGACCCTCCGGCAACAACCGGTGCATCCGCAGCAGACGTTGATGCAGAAATTGTGGCAGGGC
TTCCGGCTGTTATTTGAATCGCAATGGAAAATTTTTATTGCGCTGTTTCCGCTGATGATCATCTTCTTCAAGCAGATTGC
CTGGATTGCGCCGCTGAGTAATCTATTGGCCATTCCCTGGATCGGTCTGGTGACTGTACCGCTGGATATTCTGGCCGGTT
TAAGTTTTTATCTGGCGGAACCGCTGAGCCAGTTGCTGTTTCAGCTCAATGACTTGGCGCTAAGTCTGTTATTGGGTTGT
TTGCAGTTGCTGGATTTGCTGTTTGTGCCGCAACTGATTCCGGTTGCGCTGAGCCCACCGATGCTGCTGAGTCTGGTGCT
GGGACTGATGATTTTATTTCTTCCCGCAGGTCTAGTGCCTAAAGCCTGGTCAGCGCTGTGCTTGTTGCCTTTGCTGTTTC
AGGATCAGTTTTCTCGGCAGGTGGAACTTAGTGTGCTGGATGTTGGGCAAGGGCAGGCGATCTTTTTACGCTATCGTGAA
CACAGTATGATGATTGATATGGGCGGTCATTATGATGAACAGAAATGGAGTATCGGCCGGCAGATTATCCAGCCCTTTTT
AAGTGTCAAAGGCGTGCAGCAGTTAGATTATTTATGGTTGACCCATCTGGATCAGGATCATAGCGGCGCTTATCAGACCT
TAAAGCCACAGTTACAGGTGCAACAGGTCTATGCCAATGCTCAGCTTGAAGTAAATCCTCATAGCCATTTTGACTATTGC
CAGCAAGGACAGCAATGGCAGTGGCAGCCGGGCATCCAGATACAGGTACTCTCTCCGAAACCGGAGCAGTTAAATCCTGT
AGAACAGCAGAAAAATGAAAGTTCCTGTGTGCTGCTGGTCGAGTTTGCACAGGCTCAGCCTTATTCTCGCTTTTTATTGA
TGGGTGATGCAGGCTGGCCGACTGAATATCAGTTATTACAGGATTATCCGGATTTAAAAGTGGATGTGCTGGTGCTCGGC
CATCATGGTAGCCGGCACAGTTCATCTTACCAGTTTTTAAAACAGCTGGAGCCTAAACTGGCAATTGCATCGGCGGGGCT
AAATAACCGTTATGGGCATCCGAGCACACAGGTACAAGCCCGACTGAACGCCTTAAAAATTCCATTATGGCAGACCGCGC
AGCAGGGTAGCATCCAGTTTTATCCCACTGAGAATGAGGTGCTGCCGTACCGGCATACGCGGGTTTGGCTGCTGCGCGAT
TAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(234-515)

Domain of unknown function (DUF4131) (DUF4131)

(25-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

47.794

100

0.487
  comA/comEC Acinetobacter baylyi ADP1

47.965

100

0.486
  comA/comEC Acinetobacter baumannii strain A118

47.304

100

0.483

Multiple sequence alignment