Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACLKM0_RS08625 Genome accession   NZ_CP183907
Coordinates   1792481..1793185 (+) Length   234 a.a.
NCBI ID   WP_168398835.1    Uniprot ID   -
Organism   Acinetobacter indicus strain M3_NDM     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1787481..1798185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS08615 clpB 1789007..1791586 (-) 2580 WP_168398833.1 ATP-dependent chaperone ClpB -
  ACLKM0_RS08620 - 1791911..1792333 (-) 423 WP_005177032.1 OsmC family protein -
  ACLKM0_RS08625 crp 1792481..1793185 (+) 705 WP_168398835.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACLKM0_RS08630 - 1793355..1794404 (+) 1050 WP_411688536.1 NADP(H)-dependent aldo-keto reductase -
  ACLKM0_RS08635 - 1794493..1795275 (-) 783 WP_005177027.1 M48 family metallopeptidase -
  ACLKM0_RS08640 - 1795438..1795746 (-) 309 WP_005177024.1 hypothetical protein -
  ACLKM0_RS08645 - 1795835..1796620 (-) 786 WP_104469896.1 M48 family metallopeptidase -
  ACLKM0_RS08650 - 1796757..1798076 (-) 1320 WP_005177019.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26314.90 Da        Isoelectric Point: 4.7168

>NTDB_id=1107128 ACLKM0_RS08625 WP_168398835.1 1792481..1793185(+) (crp) [Acinetobacter indicus strain M3_NDM]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDNDREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNDAADEQFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1107128 ACLKM0_RS08625 WP_168398835.1 1792481..1793185(+) (crp) [Acinetobacter indicus strain M3_NDM]
ATGACTTCAAACTTTTCACAATTAAGCACCGATGCCCTGTCTCCTGGTCAATTACCAGATTCAGTCAAGGCATTATTAAA
ACGTGCATATATCAACCGTTATCCGAAACGGACAACAATTGTTGATGCGGGGTCTGAATCAAAATCACTTTATTTGATTC
TGAAAGGATCTGTTTCCATCATTCTGCGTGAAGATAATGATCGCGAAATTGTTGTGGCGTATTTGAATCCGGGTGACTTC
TTTGGGGAAATGGGTCTATTCGAAGCAAATCCACAACGTACTGCAGAAGTACGCACACGTGACGTTTGTGAAATTGCAGA
AGTGACTTATGAAAACTTCCACGAGCTCAGCAAGCAATATCCAGATTTAAGCTATGCGGTATTTGCCCAGCTGGTGCGCC
GTTTAAAAAATACCACACGTAAAGTGACCGATCTGGCCTTCATTGATGTTTCAGGCCGTATTGCGCGTTGTCTGATTGAC
CTGTCTGCGCAGCCTGAAGCCATGATTTTGCCAAATGGCCGTCAAATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
GGGCTGTTCACGTGAAATGGTCGGCCGTGTTCTGAAAACCCTGGAAGAACAAGGCATGATCGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCCTCTTTAGAGCAAAATGATGCAGCAGATGAACAGTTTGATGATGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.598

100

0.906
  crp Vibrio cholerae strain A1552

46.829

87.607

0.41
  crp Haemophilus influenzae Rd KW20

47.179

83.333

0.393

Multiple sequence alignment