Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACLKM1_RS12295 Genome accession   NZ_CP183903
Coordinates   2562442..2564007 (+) Length   521 a.a.
NCBI ID   WP_411689660.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2557442..2569007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS12275 - 2557941..2559245 (+) 1305 WP_005094444.1 homoserine dehydrogenase -
  ACLKM1_RS12280 thrC 2559303..2560442 (+) 1140 WP_005094446.1 threonine synthase -
  ACLKM1_RS12285 - 2560497..2561564 (-) 1068 WP_141667085.1 serine hydrolase -
  ACLKM1_RS12290 - 2561784..2562419 (+) 636 WP_005108454.1 response regulator -
  ACLKM1_RS12295 pilS 2562442..2564007 (+) 1566 WP_411689660.1 sensor histidine kinase Regulator
  ACLKM1_RS12300 pilR 2564023..2565447 (+) 1425 WP_005094453.1 sigma-54-dependent transcriptional regulator Regulator
  ACLKM1_RS12305 - 2565448..2566620 (-) 1173 WP_005169022.1 S41 family peptidase -
  ACLKM1_RS12310 gpmI 2566652..2568199 (-) 1548 WP_005169025.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59572.72 Da        Isoelectric Point: 5.9729

>NTDB_id=1107103 ACLKM1_RS12295 WP_411689660.1 2562442..2564007(+) (pilS) [Acinetobacter pseudolwoffii strain M5_NDM]
MAQKSHYSELNQYHLGIWYSAYRLLISTGLLLIFLLTYPELTSDYQYPQLYYYALGIGVAINTAQLFALKWIRRLIQPQL
IMIFFSDVCVLSLLTLASDGPNLQIGLLFVITIFSASLLLDAKKALVVTLIAVISVIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAVRRFQILENLNFSQSLELYRLQNINRYILEQIETGYLVLDENYHVVLSNPAACTLLGIEAKFAHEK
FTLYQSQPDLFELIQFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLMLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSDNEQQQVLNQMIGRQATRIDRIIQDTLNMVKNKETHPVPIHLNEFIPLFIQEDLADICD
QIQFNIDVPLLIQFDEAQFRQVLINLLRNAIRHNSADANYIQLNIHPYEHRVWIDIRDFGSGVAIHDQALLFQPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1107103 ACLKM1_RS12295 WP_411689660.1 2562442..2564007(+) (pilS) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGGCACAAAAATCACATTATTCTGAACTCAATCAGTATCATTTAGGTATCTGGTATAGCGCGTATCGCCTGCTGATCAG
CACTGGCCTGCTGCTGATTTTTCTGCTGACCTACCCCGAGCTAACCAGCGATTATCAATATCCACAACTGTATTATTATG
CGCTGGGAATCGGTGTTGCCATTAATACAGCGCAGCTGTTCGCACTGAAATGGATCAGACGCCTGATCCAGCCGCAGCTG
ATTATGATTTTTTTTAGCGATGTCTGCGTCTTAAGTTTACTGACTTTGGCAAGTGACGGGCCTAATCTGCAAATTGGTTT
GCTGTTTGTGATTACCATCTTTTCTGCATCGTTATTGCTGGATGCAAAAAAAGCTTTGGTGGTCACCCTGATTGCTGTGA
TTAGTGTCATATATCAACATTTTATCGGCAGTATTTTTGCATTTTCTTCCTTAAGCAATATCAGTAATAGTGCCCTGCTG
GCCTTTTTGTTCTTTGTGGTCTATGGAACTGGGCAAATTGCGGTGCGCCGTTTTCAGATTCTGGAAAACCTGAACTTTTC
GCAATCTCTGGAACTTTATCGCTTACAGAATATTAACCGTTATATTCTGGAACAGATCGAAACTGGCTATCTGGTGCTGG
ATGAAAATTATCATGTGGTCCTGAGTAACCCTGCGGCCTGTACACTGCTCGGGATCGAAGCAAAATTTGCGCATGAGAAA
TTTACCCTCTACCAGTCACAACCAGATTTATTTGAACTGATCCAGTTTGAAACGCTGGAAAATGGCGAGCGTTTTCAATT
TGAATCACAGCAAAGTCGCTATAACATTCATGTACAGGTACAAAAGCTGATTGTGCCGCATCAAACCCTGATGTTATTGG
TGTTACAGGATGCCAAAAAACTCAATCAACAGGTGCAGCAACTCAAGCTTGCTGCACTGGGCCAGCTTTCAGCCAGTATT
GCGCATGAAATTCGTAATCCATTGGCAGCTATTGTGCAGGCCAATGATTTATACCTTGACTCTGACAATGAACAACAACA
AGTACTCAACCAGATGATTGGCCGACAGGCGACCCGGATCGACCGGATTATTCAGGACACGCTGAATATGGTCAAAAATA
AAGAAACCCATCCGGTGCCGATTCATCTCAATGAATTTATCCCGTTATTTATCCAGGAAGATTTGGCCGATATTTGCGAT
CAGATTCAATTTAATATTGATGTGCCGCTGCTGATTCAGTTCGATGAAGCGCAGTTCCGGCAAGTCCTGATTAACCTGCT
TCGCAATGCCATCCGTCACAATTCAGCAGATGCCAATTACATTCAGCTGAATATACATCCCTATGAACATCGGGTCTGGA
TTGATATCCGGGATTTCGGCTCAGGTGTAGCCATACACGACCAAGCCCTATTATTTCAACCTTTTTTCAGCACCTCGATT
AGTGGAACCGGATTAGGACTGTACTTATCACATAGTTTTTGTGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATTAGCTGCCAACGTATTACGGTATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.426

96.929

0.557

Multiple sequence alignment