Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLKM1_RS11445 Genome accession   NZ_CP183903
Coordinates   2389475..2390110 (+) Length   211 a.a.
NCBI ID   WP_074383589.1    Uniprot ID   A0A2H9YQY8
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2384475..2395110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS11435 - 2386594..2387409 (-) 816 WP_411689692.1 NAD-dependent epimerase/dehydratase family protein -
  ACLKM1_RS11440 recG 2387443..2389488 (+) 2046 WP_100357824.1 ATP-dependent DNA helicase RecG -
  ACLKM1_RS11445 comF 2389475..2390110 (+) 636 WP_074383589.1 ComF family protein Machinery gene
  ACLKM1_RS11450 - 2390114..2390515 (-) 402 WP_005094183.1 NUDIX hydrolase -
  ACLKM1_RS11455 - 2390547..2391137 (-) 591 WP_411689691.1 TIGR00730 family Rossman fold protein -
  ACLKM1_RS11460 - 2391290..2392303 (+) 1014 WP_005168743.1 CorA family divalent cation transporter -
  ACLKM1_RS11465 - 2392629..2392919 (-) 291 WP_005168745.1 STAS domain-containing protein -
  ACLKM1_RS11470 - 2392935..2393567 (-) 633 WP_005094187.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACLKM1_RS11475 - 2393586..2394263 (-) 678 WP_005094188.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACLKM1_RS11480 mlaE 2394263..2395042 (-) 780 WP_180001109.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24215.36 Da        Isoelectric Point: 8.9885

>NTDB_id=1107092 ACLKM1_RS11445 WP_074383589.1 2389475..2390110(+) (comF) [Acinetobacter pseudolwoffii strain M5_NDM]
MPMFKLLAQGISKLNTLQPCQLCQTDYQSIYSVCQDCWQQLPWIHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHL
QNLLAGTLLSLELPKVSAIVPMPISTERLAERGYNQSLVLAKHVAKKLNVPIWQPVSRLKQHSQKGLSRLERIEDIQSQF
QISTPSNIRYRRVLIIDDVVTTGSSILALTRKLEELGCQKIYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1107092 ACLKM1_RS11445 WP_074383589.1 2389475..2390110(+) (comF) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGCCTATGTTTAAATTACTGGCACAGGGAATCTCCAAGCTGAATACGCTTCAGCCCTGCCAGTTGTGTCAGACTGATTA
TCAGAGCATTTATTCAGTCTGTCAGGATTGCTGGCAGCAGTTGCCGTGGATACATCAAACCATTCAGCGTCAAGAAATGC
AGTTTCAGATTGCCTGCGATTATGCCTACCCAATGGATCGGTTGATTCAGCTGTTTAAATATGAACAGAAGCTGCATTTG
CAAAATTTACTGGCCGGTACGCTGTTGAGTTTAGAATTACCCAAAGTCAGTGCAATAGTCCCGATGCCGATCTCGACTGA
ACGCCTGGCCGAACGCGGTTATAATCAATCTCTGGTACTGGCCAAGCATGTGGCGAAAAAATTGAATGTTCCCATCTGGC
AACCTGTTAGCCGGCTGAAACAGCATTCACAAAAAGGCTTAAGCCGTCTGGAAAGAATCGAAGATATCCAGTCGCAGTTT
CAGATCAGTACACCGTCTAATATTCGTTACCGACGCGTGCTAATCATTGATGATGTAGTGACGACTGGCAGTTCGATTCT
AGCGCTCACTCGAAAACTTGAAGAGCTAGGCTGTCAAAAAATTTATGCAGCCTGTCTGGCAGGCGCGCAAATCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H9YQY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

60.096

98.578

0.592
  comF Acinetobacter baumannii strain A118

59.615

98.578

0.588

Multiple sequence alignment