Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACLKM1_RS04965 Genome accession   NZ_CP183903
Coordinates   1067742..1068449 (+) Length   235 a.a.
NCBI ID   WP_005171629.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062742..1073449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS04940 - 1062932..1063051 (-) 120 Protein_948 DNA-binding protein -
  ACLKM1_RS04945 - 1063417..1063758 (+) 342 WP_004282243.1 helix-turn-helix domain-containing protein -
  ACLKM1_RS04950 - 1064808..1065491 (+) 684 WP_086044901.1 metallophosphoesterase -
  ACLKM1_RS04955 - 1066046..1067083 (+) 1038 WP_179999586.1 metallophosphoesterase -
  ACLKM1_RS04960 - 1067172..1067594 (-) 423 WP_005171632.1 OsmC family protein -
  ACLKM1_RS04965 crp 1067742..1068449 (+) 708 WP_005171629.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACLKM1_RS04970 - 1068641..1069690 (+) 1050 WP_411689751.1 NADP(H)-dependent aldo-keto reductase -
  ACLKM1_RS04975 clpB 1070270..1072849 (+) 2580 WP_411689750.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26438.18 Da        Isoelectric Point: 4.6679

>NTDB_id=1107081 ACLKM1_RS04965 WP_005171629.1 1067742..1068449(+) (crp) [Acinetobacter pseudolwoffii strain M5_NDM]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEVNPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDVSLEEPETVSAGELEDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1107081 ACLKM1_RS04965 WP_005171629.1 1067742..1068449(+) (crp) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGACTTCAAACTTTTCACAATTGAGCACAGATGCGCTTTCTCCGGGGCAATTACCAGAATCCGTGAAAGCACTGTTAAA
ACGTGCATATATTAATCGTTATCCAAAACGTACTACGATCATTGATGCAGGATCAGAATCTAAATCTTTGTATTTGATTT
TGAAGGGGTCTGTATCCATCATTCTTCGTGAAGATGATGATCGTGAGATTGTCGTGGCATATTTAAATCCAGGTGACTTT
TTTGGGGAAATGGGTTTATTTGAGGTAAATCCACAACGTACTGCAGAAGTTCGTACACGTGATGTGTGTGAAATTGCTGA
AATCACCTATGAAAATTTTCATGAAATCAGCAAGCAATATCCTGATCTGAGCTATGCGGTATTTGCTCAGCTGGTACGCC
GTCTGAAAAATACCACACGTAAAGTGACTGATCTGGCATTCATTGATGTTTCAGGCCGTATTGCACGTTGCCTGATCGAC
TTGTCTTCTCAGCCTGAGGCGATGATTTTACCAAATGGCCGTCAGATTCGTATTACCCGTCAGGAAATTGGCCGTATTGT
CGGTTGTTCCCGCGAAATGGTCGGCCGTGTACTGAAGACACTTGAAGAACAGGGTATGATTGAAACTGATGGTAAAGCCA
TTCTGATTTTCGATGTTTCTCTGGAGGAGCCAGAAACGGTCAGTGCCGGTGAGCTCGAAGACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.619

94.894

0.898
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

47.668

82.128

0.391

Multiple sequence alignment