Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACGHJL_RS07860 Genome accession   NZ_AP035765
Coordinates   1668075..1668710 (+) Length   211 a.a.
NCBI ID   WP_043214385.1    Uniprot ID   -
Organism   Pseudomonas guariconensis strain KNHN1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1663075..1673710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHJL_RS07840 (KNHN1_15210) - 1663368..1664300 (+) 933 WP_070573244.1 ABC transporter ATP-binding protein -
  ACGHJL_RS07845 (KNHN1_15220) - 1664297..1665076 (+) 780 WP_043214381.1 ABC transporter permease -
  ACGHJL_RS07850 (KNHN1_15230) - 1664960..1665601 (-) 642 WP_139205743.1 DUF2062 domain-containing protein -
  ACGHJL_RS07855 (KNHN1_15240) comA 1665745..1667964 (+) 2220 WP_289717676.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACGHJL_RS07860 (KNHN1_15250) exbB 1668075..1668710 (+) 636 WP_043214385.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACGHJL_RS07865 (KNHN1_15260) - 1668707..1669141 (+) 435 WP_043214387.1 biopolymer transporter ExbD -
  ACGHJL_RS07870 (KNHN1_15270) lpxK 1669141..1670151 (+) 1011 WP_090343775.1 tetraacyldisaccharide 4'-kinase -
  ACGHJL_RS07875 (KNHN1_15280) - 1670194..1670379 (+) 186 WP_003247142.1 Trm112 family protein -
  ACGHJL_RS07880 (KNHN1_15290) kdsB 1670376..1671140 (+) 765 WP_070573253.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACGHJL_RS07885 (KNHN1_15300) - 1671140..1671604 (+) 465 WP_043214393.1 low molecular weight protein-tyrosine-phosphatase -
  ACGHJL_RS07890 (KNHN1_15310) murB 1671601..1672617 (+) 1017 WP_043214395.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22828.07 Da        Isoelectric Point: 7.3616

>NTDB_id=110708 ACGHJL_RS07860 WP_043214385.1 1668075..1668710(+) (exbB) [Pseudomonas guariconensis strain KNHN1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYIGTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANPAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=110708 ACGHJL_RS07860 WP_043214385.1 1668075..1668710(+) (exbB) [Pseudomonas guariconensis strain KNHN1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCACCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGTTGGGCGAAATCCTCGCTGCGGGCCTGGCCAAC
TCCCGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCCCGGGTCATCCATGAGTTGGAGCGCTATAT
CGGTACATTGGGCACCATCGCCGCGATGGCCCCCTTGCTCGGCCTTCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACCCGGCCGTTCTCGCGGGTGGTATTTCCAAGGCCCTGGTCACCACGGCC
GCCGGCCTGATGGTGGGGATCCCGGCGGTCTTCTTCCACCGGTTCCTGCAGCGACGCATCGATGAGCTGGTCGTCGGCAT
GGAGCAGGAGGCAATCAAGCTGGTCGAGGTGCTGCAAGGCGATCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815

Multiple sequence alignment