Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACLKM2_RS04975 Genome accession   NZ_CP183899
Coordinates   1085002..1085709 (+) Length   235 a.a.
NCBI ID   WP_005171629.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080002..1090709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM2_RS04950 - 1080004..1081995 (+) 1992 WP_411686242.1 transglutaminaseTgpA domain-containing protein -
  ACLKM2_RS04965 - 1083306..1084343 (+) 1038 WP_411686245.1 metallophosphoesterase -
  ACLKM2_RS04970 - 1084432..1084854 (-) 423 WP_005171632.1 OsmC family protein -
  ACLKM2_RS04975 crp 1085002..1085709 (+) 708 WP_005171629.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACLKM2_RS04980 - 1085901..1086950 (+) 1050 WP_159515913.1 NADP(H)-dependent aldo-keto reductase -
  ACLKM2_RS04985 clpB 1087530..1090109 (+) 2580 WP_005096526.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26438.18 Da        Isoelectric Point: 4.6679

>NTDB_id=1107043 ACLKM2_RS04975 WP_005171629.1 1085002..1085709(+) (crp) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEVNPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDVSLEEPETVSAGELEDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1107043 ACLKM2_RS04975 WP_005171629.1 1085002..1085709(+) (crp) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
ATGACTTCAAACTTTTCACAATTGAGCACAGATGCGCTTTCTCCGGGGCAATTACCAGAATCCGTGAAAGCACTGTTAAA
ACGTGCATATATTAATCGTTATCCAAAACGTACTACGATCATTGATGCAGGATCAGAATCTAAATCTTTGTATTTGATTT
TGAAGGGGTCTGTATCCATCATTCTTCGTGAAGATGATGATCGTGAGATTGTCGTGGCATATTTAAATCCAGGTGACTTT
TTTGGGGAAATGGGTTTATTTGAGGTAAATCCACAACGTACTGCAGAAGTTCGTACACGTGATGTGTGTGAAATTGCTGA
AATCACCTATGAAAATTTTCATGAAATCAGCAAGCAATATCCTGATCTGAGCTATGCGGTATTTGCTCAGCTGGTACGCC
GTCTGAAAAATACCACACGTAAAGTGACTGATCTGGCATTCATTGATGTTTCAGGCCGTATTGCACGTTGCCTGATCGAC
TTGTCTTCTCAGCCTGAGGCGATGATTTTACCAAATGGCCGTCAGATTCGTATTACCCGTCAGGAAATTGGCCGTATTGT
CGGTTGTTCCCGCGAAATGGTCGGCCGTGTACTGAAGACACTTGAAGAACAGGGTATGATTGAAACTGATGGTAAAGCCA
TTCTGATTTTCGATGTTTCTCTGGAGGAGCCAGAAACGGTCAGTGCCGGTGAGCTCGAAGACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.619

94.894

0.898
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

47.668

82.128

0.391

Multiple sequence alignment