Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACLKM3_RS08475 Genome accession   NZ_CP183897
Coordinates   1768642..1769346 (+) Length   234 a.a.
NCBI ID   WP_004971566.1    Uniprot ID   A0AAP4HCD2
Organism   Acinetobacter towneri strain M10_NDM     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763642..1774346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM3_RS08460 - 1763668..1764951 (-) 1284 WP_026438179.1 DUF945 family protein -
  ACLKM3_RS08465 clpB 1765180..1767759 (-) 2580 WP_286431086.1 ATP-dependent chaperone ClpB -
  ACLKM3_RS08470 - 1768071..1768493 (-) 423 WP_019837618.1 OsmC family protein -
  ACLKM3_RS08475 crp 1768642..1769346 (+) 705 WP_004971566.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACLKM3_RS08480 - 1769551..1770600 (+) 1050 WP_019837619.1 NADP(H)-dependent aldo-keto reductase -
  ACLKM3_RS08485 - 1770796..1771578 (-) 783 WP_019837620.1 M48 family metallopeptidase -
  ACLKM3_RS08490 - 1771735..1772043 (-) 309 WP_019837621.1 hypothetical protein -
  ACLKM3_RS08495 - 1772282..1773601 (-) 1320 WP_019837622.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26333.90 Da        Isoelectric Point: 4.7168

>NTDB_id=1107017 ACLKM3_RS08475 WP_004971566.1 1768642..1769346(+) (crp) [Acinetobacter towneri strain M10_NDM]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNESTDGNFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1107017 ACLKM3_RS08475 WP_004971566.1 1768642..1769346(+) (crp) [Acinetobacter towneri strain M10_NDM]
ATGACTTCCAACTTTTCACAGCTGAGTACTGATGCATTGTCCCCAGGACAACTGCCTGACTCAGTCAAAGCATTATTAAA
ACGTGCATACATCAACCGTTATCCAAAACGGACAACTATTGTTGATGCAGGGACTGAATCAAAATCATTATATTTGATTC
TAAAAGGTTCAGTATCAATTATTCTTCGCGAAGATGACGATCGCGAAATTGTTGTGGCATATTTGAATCCAGGTGACTTT
TTTGGGGAAATGGGTCTGTTTGAATCGAATCCACAACGTACTGCAGAGGTTCGTACTCGTGATGTCTGTGAAATCGCAGA
AATTACTTATGAAAATTTCCACGAACTCAGCAAACAATATCCCGATTTAAGCTATGCCGTTTTTGCACAGCTGGTACGTC
GTTTAAAAAATACCACACGTAAAGTGACTGACCTTGCCTTTATAGATGTGTCTGGTCGTATTGCACGTTGCTTGATTGAT
CTTTCTGCGCAGCCAGAAGCCATGATTTTGCCAAACGGTCGTCAAATTCGTATTACACGCCAAGAAATTGGTCGTATTGT
CGGTTGTTCACGTGAAATGGTCGGGCGTGTTCTAAAAACACTTGAAGAACAAGGCATGATTGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCTTCTTTGGAGCAAAATGAATCCACTGATGGCAACTTTGATGACGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.88

100

0.919
  crp Vibrio cholerae strain A1552

47.317

87.607

0.415
  crp Haemophilus influenzae Rd KW20

47.692

83.333

0.397

Multiple sequence alignment