Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ACN6MQ_RS02430 Genome accession   NZ_CP183887
Coordinates   503989..504702 (+) Length   237 a.a.
NCBI ID   WP_074093207.1    Uniprot ID   -
Organism   Paenibacillus xylanexedens strain BH4     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 498989..509702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MQ_RS02405 (ACN6MQ_02405) - 499697..500953 (+) 1257 WP_419890832.1 DUF445 domain-containing protein -
  ACN6MQ_RS02410 (ACN6MQ_02410) - 501039..501392 (-) 354 WP_036616662.1 YxeA family protein -
  ACN6MQ_RS02415 (ACN6MQ_02415) - 501422..502153 (-) 732 WP_211084479.1 ABC transporter permease -
  ACN6MQ_RS02420 (ACN6MQ_02420) - 502166..502915 (-) 750 WP_091038114.1 ABC transporter permease -
  ACN6MQ_RS02425 (ACN6MQ_02425) - 502915..503835 (-) 921 WP_419890833.1 ABC transporter ATP-binding protein -
  ACN6MQ_RS02430 (ACN6MQ_02430) scnR 503989..504702 (+) 714 WP_074093207.1 response regulator transcription factor Regulator
  ACN6MQ_RS02435 (ACN6MQ_02435) - 504702..506084 (+) 1383 WP_419890834.1 sensor histidine kinase -
  ACN6MQ_RS02440 (ACN6MQ_02440) - 506362..506544 (+) 183 WP_074093209.1 type A2 lanthipeptide -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27038.38 Da        Isoelectric Point: 4.8542

>NTDB_id=1106814 ACN6MQ_RS02430 WP_074093207.1 503989..504702(+) (scnR) [Paenibacillus xylanexedens strain BH4]
MELLKNKKILIVDDEPEIREMIERFLRKEGFFRVYTADNFVNALAVCRLEKPDAAILDVMLPDGDGFSLLSSIRSFSDMP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELILRLMAILKRVYASNTVERLPVFRLGEQTIDLESAVVQGTDRELPL
TAKEHAILIKLYENQGRIVTSDALCQAVWGDESYGYENTLMVHVRRIREKIEEDPSKPVFLLTVRGLGYKLMAQESR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1106814 ACN6MQ_RS02430 WP_074093207.1 503989..504702(+) (scnR) [Paenibacillus xylanexedens strain BH4]
ATGGAATTATTGAAGAATAAGAAAATATTGATCGTAGATGATGAACCGGAGATACGGGAAATGATTGAACGTTTTTTACG
TAAAGAAGGTTTTTTTCGGGTCTATACGGCCGATAACTTCGTGAATGCCTTGGCAGTATGCAGGCTTGAAAAGCCGGATG
CAGCCATCCTGGACGTGATGCTTCCAGATGGGGATGGGTTCTCTCTGCTCTCTTCGATCCGGTCATTCTCGGACATGCCT
GTTCTGTTTCTGTCGGCACGAGGTGAAGATGAGGATCGATTGCTCGGTCTGGGGCTTGGAGCAGATGATTATATGGTCAA
GCCCTTTCTGCCAAGAGAGTTGATTCTCAGGCTGATGGCTATTCTGAAGCGGGTATATGCCTCCAATACAGTGGAGAGAT
TGCCTGTATTCCGTTTAGGTGAACAAACCATTGATCTTGAGAGTGCTGTTGTACAGGGGACAGACAGGGAGCTTCCATTG
ACAGCTAAGGAGCACGCCATACTGATCAAGTTGTATGAGAATCAAGGCCGGATTGTAACCAGTGATGCCCTGTGTCAAGC
CGTATGGGGAGACGAGAGTTATGGTTATGAAAATACACTGATGGTGCATGTTCGGCGAATCCGGGAGAAGATTGAGGAAG
ACCCATCCAAACCGGTATTTTTGCTAACCGTTCGGGGACTTGGTTACAAACTGATGGCTCAGGAGTCTAGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.22

95.781

0.481
  micA Streptococcus pneumoniae Cp1015

41.304

97.046

0.401
  vicR Streptococcus mutans UA159

39.056

98.312

0.384

Multiple sequence alignment