Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACGHCW_RS11260 Genome accession   NZ_AP031614
Coordinates   2436093..2438348 (-) Length   751 a.a.
NCBI ID   WP_390501887.1    Uniprot ID   -
Organism   Vibrio harveyi strain TUMSAT-2019     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2431093..2443348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHCW_RS11240 (VHTUMSATKI_21480) - 2431819..2431998 (-) 180 WP_005378451.1 Trm112 family protein -
  ACGHCW_RS11245 (VHTUMSATKI_21490) lpxK 2431979..2432986 (-) 1008 WP_047513176.1 tetraacyldisaccharide 4'-kinase -
  ACGHCW_RS11250 (VHTUMSATKI_21500) msbA 2432992..2434740 (-) 1749 WP_390501886.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACGHCW_RS11255 (VHTUMSATKI_21510) - 2435066..2436055 (+) 990 WP_322851588.1 glycosyltransferase -
  ACGHCW_RS11260 comEC 2436093..2438348 (-) 2256 WP_390501887.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACGHCW_RS11265 (VHTUMSATKI_21530) - 2438357..2438866 (+) 510 WP_005446692.1 DUF2062 domain-containing protein -
  ACGHCW_RS11270 (VHTUMSATKI_21540) lolE 2439064..2440308 (-) 1245 WP_390501888.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACGHCW_RS11275 (VHTUMSATKI_21550) lolD 2440311..2441018 (-) 708 WP_029790268.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACGHCW_RS11280 (VHTUMSATKI_21560) lolC 2441011..2442219 (-) 1209 WP_390501889.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACGHCW_RS11285 (VHTUMSATKI_21570) - 2442484..2443053 (+) 570 WP_390501890.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84342.86 Da        Isoelectric Point: 9.6792

>NTDB_id=110675 ACGHCW_RS11260 WP_390501887.1 2436093..2438348(-) (comEC) [Vibrio harveyi strain TUMSAT-2019]
MTLLEKSLTLALFVASVISSAWWPTIPDWRWLLLGIIATGSIIKLRRGLLSIGVISGFMVVIIHGNVMEHQRQALFQAGV
NITINGKVDSPFTQISHGYEGIVRVHQVNSQNLLPFFKPKIRLITPFPLAVNSEFTTEVTIKPIFGLLNEAGHDAEKQAV
GKGIVARATVSKDSAWLIRERSSLRTQIIAVVHKHIVQLEHFALIRALAFSDRTLLSRYDWQLLRDSGLLHLVSISGLHI
GMAFAFGMSLGVVVRYALPKFVFLPSLFGLATAFLYSWLADFSLPTTRAFSVCLIYLLLKSALIYWSAWRVLLLAVAIQL
CIEPFSALTMSFWLSYLSVIAVLFAVNCVQHSRGNWIRKLGTLFKIQLVLTVLIIPISGLFFAGTSLSSILYNLIFIPWF
GFVVVPLMFVALIITPFSAHLANMLWQWLDWMLIPLTWSLPFALGSWQSLSSQATLWVLVLGVCVLSIRFLNREASGVLF
LVITSLALWYERKSDGWRIDVLDVGHGLAVLLEKDGEVLLYDTGKTWAYGSIAEQVIAPILYRRGFGSIDMFVVSHADSD
HAGGRAYIERHFAPVRKFSSQNYANYQPCIAGERWKWQALEFEVLWPPKLVKRAYNPHSCVIRVVDTKTDFKLLLTGDIE
AVSEWILVRNPDQLKSDVVIVPHHGSKSSSNPKFVEAIAPKLAIASLAKGNQWGMPANNVVLAYENANAKWLDTGNGGQI
SVLIEQENWYFETKRSETFDPWYRQMLRNGN

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=110675 ACGHCW_RS11260 WP_390501887.1 2436093..2438348(-) (comEC) [Vibrio harveyi strain TUMSAT-2019]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCTTTATTTGTAGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATTGCCACTGGCTCAATAATAAAATTACGACGTGGCTTATTGAGCATAGGCG
TAATTTCGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGTGCGTGTCCATCA
GGTGAATTCTCAAAACTTGTTACCTTTTTTTAAACCGAAAATCCGGTTGATAACGCCTTTCCCACTCGCCGTTAACAGTG
AGTTCACTACCGAAGTGACAATTAAACCCATCTTTGGGCTTTTAAACGAAGCAGGTCATGACGCCGAAAAGCAGGCAGTA
GGAAAGGGCATTGTCGCAAGGGCGACGGTTTCAAAGGATTCTGCGTGGCTTATTCGTGAGCGATCATCATTAAGAACGCA
AATTATCGCCGTCGTTCATAAGCACATTGTTCAGCTTGAACATTTCGCTCTTATTCGTGCTTTGGCGTTTAGTGACCGTA
CGCTTCTGTCTCGATATGACTGGCAACTCCTGCGTGATAGTGGCTTACTGCATTTGGTTTCGATTTCGGGTTTACATATA
GGAATGGCGTTTGCTTTTGGTATGAGCTTAGGGGTTGTTGTTAGGTACGCTTTGCCAAAATTTGTCTTTTTACCTTCCTT
GTTTGGGCTTGCTACTGCTTTTTTGTATTCATGGTTAGCAGATTTCTCTTTGCCTACGACTCGAGCTTTTTCAGTATGTT
TGATTTACTTGTTATTAAAGTCTGCTTTGATTTATTGGAGCGCTTGGCGCGTGCTGCTCCTTGCTGTAGCAATACAGTTG
TGCATCGAGCCGTTTTCTGCACTCACTATGAGCTTTTGGCTGTCTTATCTCTCTGTTATCGCCGTTTTATTTGCAGTGAA
TTGTGTACAACATAGCCGTGGCAATTGGATTAGGAAACTGGGTACCTTATTCAAAATTCAGTTAGTACTCACTGTGTTGA
TCATTCCGATTAGTGGGTTGTTTTTTGCCGGGACGAGCCTCTCCTCTATTTTATATAACCTCATTTTTATCCCTTGGTTC
GGTTTTGTTGTCGTTCCACTGATGTTTGTTGCACTTATCATTACCCCGTTTTCAGCGCACTTGGCGAACATGCTGTGGCA
GTGGTTAGATTGGATGCTTATACCCCTTACTTGGTCTTTGCCATTTGCTTTGGGGAGTTGGCAATCTCTTAGCTCACAGG
CAACGTTGTGGGTGCTGGTATTGGGCGTTTGTGTGCTTTCGATACGATTTTTAAATCGAGAAGCTTCAGGTGTTTTGTTC
TTGGTCATCACAAGTCTGGCGTTGTGGTATGAACGAAAATCCGATGGTTGGCGTATTGATGTGTTAGATGTTGGGCATGG
ACTTGCAGTGCTCCTAGAAAAAGACGGTGAAGTGCTTTTATATGACACGGGTAAAACATGGGCTTATGGAAGTATTGCTG
AACAAGTTATTGCTCCTATCTTGTATCGCAGAGGGTTCGGTTCTATCGACATGTTTGTCGTCAGTCACGCCGACTCAGAT
CATGCTGGAGGACGTGCATATATCGAAAGGCACTTCGCCCCAGTTCGTAAGTTTAGTAGCCAAAACTACGCTAACTACCA
ACCTTGTATTGCGGGGGAGCGATGGAAATGGCAAGCGCTAGAATTTGAAGTTCTTTGGCCGCCGAAGTTGGTTAAACGTG
CATATAACCCACATTCATGCGTGATTCGTGTCGTCGATACCAAAACGGATTTTAAGTTGCTATTAACGGGCGATATTGAA
GCCGTTAGTGAATGGATCTTGGTGAGAAACCCCGATCAGTTAAAAAGTGATGTTGTGATTGTCCCGCATCACGGAAGTAA
GAGCTCTTCTAATCCCAAGTTTGTTGAAGCGATTGCCCCGAAACTGGCGATCGCATCTCTGGCAAAAGGGAATCAGTGGG
GAATGCCTGCAAATAACGTGGTTCTAGCGTACGAGAACGCCAATGCGAAATGGCTGGATACGGGGAATGGCGGTCAAATA
AGCGTCCTTATTGAGCAAGAGAATTGGTATTTTGAAACGAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAACGGAAATTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-468)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

75.3

99.734

0.751
  comEC Vibrio parahaemolyticus RIMD 2210633

65.287

99.734

0.651
  comEC Vibrio cholerae strain A1552

40.957

100

0.41

Multiple sequence alignment