Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ACGHCW_RS01925 Genome accession   NZ_AP031614
Coordinates   402090..402734 (-) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain TUMSAT-2019     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 397090..407734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHCW_RS01915 (VHTUMSATKI_03260) uvrA 398096..400918 (-) 2823 WP_281188347.1 excinuclease ABC subunit UvrA -
  ACGHCW_RS01920 (VHTUMSATKI_03270) galU 401056..401928 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACGHCW_RS01925 (VHTUMSATKI_03280) qstR 402090..402734 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACGHCW_RS01930 (VHTUMSATKI_03290) ssb 403029..403568 (+) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  ACGHCW_RS01935 (VHTUMSATKI_03300) csrD 403820..405829 (+) 2010 WP_253650752.1 RNase E specificity factor CsrD -
  ACGHCW_RS01940 (VHTUMSATKI_03310) - 405841..407289 (+) 1449 WP_110416082.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=110654 ACGHCW_RS01925 WP_009698824.1 402090..402734(-) (qstR) [Vibrio harveyi strain TUMSAT-2019]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=110654 ACGHCW_RS01925 WP_009698824.1 402090..402734(-) (qstR) [Vibrio harveyi strain TUMSAT-2019]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTATTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGTTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTGCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACTTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment