Detailed information NTG1106218

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACM62G_RS07545
• Genome accession: NZ_CP183808
• Coordinates: 1628965..1630308 (+)
• Length: 447 a.a.
• NCBI ID: WP_273824790.1
• Uniprot ID: -
• Organism: Pseudomonas sp. COR18
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1623965..1635308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM62G_RS07520 (ACM62G_07520)	pgeF	1624163..1624888 (-)	726	WP_054063786.1	peptidoglycan editing factor PgeF	-
ACM62G_RS07525 (ACM62G_07525)	rluD	1624885..1625847 (-)	963	WP_026145391.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACM62G_RS07530 (ACM62G_07530)	-	1625998..1627014 (+)	1017	WP_054059023.1	outer membrane protein assembly factor BamD	-
ACM62G_RS07535 (ACM62G_07535)	-	1627150..1627383 (+)	234	WP_273824788.1	PP0621 family protein	-
ACM62G_RS07540 (ACM62G_07540)	pilS	1627373..1628962 (+)	1590	WP_419736953.1	sensor histidine kinase	Regulator
ACM62G_RS07545 (ACM62G_07545)	pilR	1628965..1630308 (+)	1344	WP_273824790.1	sigma-54-dependent transcriptional regulator	Regulator
ACM62G_RS07550 (ACM62G_07550)	thiO	1630346..1631449 (-)	1104	WP_419736954.1	glycine oxidase ThiO	-
ACM62G_RS07555 (ACM62G_07555)	-	1631501..1631899 (-)	399	WP_273824792.1	type IV pilin protein	-
ACM62G_RS07560 (ACM62G_07560)	-	1631912..1635043 (-)	3132	WP_419736955.1	pilus assembly protein	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49780.95 Da
• Isoelectric Point: 6.2064

>NTDB_id=1106218 ACM62G_RS07545 WP_273824790.1 1628965..1630308(+) (pilR) [Pseudomonas sp. COR18]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTQSARNVGEAREKLARDHFDLCLTDMRLPDGTGLELVQHIQQRHPQVPVA
MITAYGNLDTAINALKSGAFDFLTKPVDLARLRELVASALRLPVAGQKPTTIDTRLLGDSLPMRALRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSIGGQQEEVVDVRILCATHKDLTAEVAAERFRQDLYYRLNVIELRVPALRERRDDIEPLAAN
VLQRLASGSGQPAARLHPQALETLKGYRFPGNVRELENMLERAYTLCENDQIEASDLRLAESAGNTAEAGEPSLAQIDNL
EDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1344 bp

>NTDB_id=1106218 ACM62G_RS07545 WP_273824790.1 1628965..1630308(+) (pilR) [Pseudomonas sp. COR18]
ATGAGCCCACGGCAAAAGGTCCTGATCGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAAATCACTCTGGGCCGGAT
GAAACTCGACACCCAGAGCGCCCGCAATGTCGGCGAAGCCCGGGAAAAACTCGCCCGGGACCACTTCGACCTGTGCCTGA
CGGACATGCGCCTGCCGGATGGCACCGGCCTGGAACTGGTACAGCACATCCAGCAGCGCCACCCCCAGGTGCCGGTGGCG
ATGATCACCGCCTACGGCAACCTCGATACCGCCATCAACGCACTCAAGTCCGGCGCCTTCGACTTCCTCACCAAGCCAGT
GGACCTGGCCCGCCTGCGGGAACTGGTGGCCAGTGCCCTGCGGCTGCCGGTGGCCGGGCAAAAGCCGACGACCATCGACA
CCCGTCTTCTGGGCGACTCGCTGCCCATGCGCGCCCTGCGCAAGCAGATCGACAAGCTGGCCCGCAGCCAGGCGCCGGTG
TACATCAGCGGCGAATCAGGCAGCGGCAAAGAACTGGTGGCGCGCCTGATCCACGAGCAGGGCCCGCGTGCCGAACGACC
GTTCGTGCCGGTCAACTGCGGGGCGATTCCGTCGGAACTGATGGAAAGCGAATTCTTCGGTCACCGCAAGGGCAGCTTCA
GCGGTGCGGTCGAGGACAAACCCGGACTGTTCCAGGCGGCCAACGGCGGCACGCTGTTCCTCGACGAGGTGGCGGACCTG
CCGTTGGCCATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAGAAGGCCGTACGCAGCATCGGCGGGCAGCAGGAGGAAGT
GGTTGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTGACCGCCGAAGTCGCTGCCGAGCGCTTTCGCCAGGATCTGT
ACTACCGACTGAATGTCATCGAACTGCGCGTCCCGGCCCTGCGTGAGCGCCGGGACGATATCGAGCCACTGGCGGCCAAT
GTACTCCAGCGTCTGGCCTCCGGCAGCGGCCAGCCGGCCGCCAGGCTGCACCCGCAGGCGCTGGAAACGCTCAAGGGCTA
CCGCTTCCCCGGCAACGTGCGGGAACTGGAGAACATGCTCGAACGGGCCTACACCCTCTGCGAAAACGACCAGATCGAAG
CCAGCGACCTGCGCCTGGCGGAATCCGCAGGCAACACGGCCGAGGCCGGCGAACCGAGCCTGGCGCAGATCGACAACCTT
GAGGATTACCTGGAGAGCGTCGAACGCAAGCTGATCCTCCAGGCCCTGGAGGAGACCCGCTGGAACCGCACGGCGGCGGC
CCAGCGTCTGAGCCTGTCATTTCGTTCGATGCGCTATCGCCTGAAGAAACTGGGGCTGGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	81.614	99.776	0.814
pilR	Acinetobacter baumannii strain A118	48.584	100	0.499