Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACM62G_RS07540 Genome accession   NZ_CP183808
Coordinates   1627373..1628962 (+) Length   529 a.a.
NCBI ID   WP_419736953.1    Uniprot ID   -
Organism   Pseudomonas sp. COR18     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1622373..1633962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM62G_RS07520 (ACM62G_07520) pgeF 1624163..1624888 (-) 726 WP_054063786.1 peptidoglycan editing factor PgeF -
  ACM62G_RS07525 (ACM62G_07525) rluD 1624885..1625847 (-) 963 WP_026145391.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACM62G_RS07530 (ACM62G_07530) - 1625998..1627014 (+) 1017 WP_054059023.1 outer membrane protein assembly factor BamD -
  ACM62G_RS07535 (ACM62G_07535) - 1627150..1627383 (+) 234 WP_273824788.1 PP0621 family protein -
  ACM62G_RS07540 (ACM62G_07540) pilS 1627373..1628962 (+) 1590 WP_419736953.1 sensor histidine kinase Regulator
  ACM62G_RS07545 (ACM62G_07545) pilR 1628965..1630308 (+) 1344 WP_273824790.1 sigma-54-dependent transcriptional regulator Regulator
  ACM62G_RS07550 (ACM62G_07550) thiO 1630346..1631449 (-) 1104 WP_419736954.1 glycine oxidase ThiO -
  ACM62G_RS07555 (ACM62G_07555) - 1631501..1631899 (-) 399 WP_273824792.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58902.83 Da        Isoelectric Point: 6.7268

>NTDB_id=1106217 ACM62G_RS07540 WP_419736953.1 1627373..1628962(+) (pilS) [Pseudomonas sp. COR18]
MTAETFGLGGAQAQRLLRLYNLYRLSIGIALVLLISSRMDDKLLELTDGELFRTGSWIYLILNILVVVLLENPRRQAQVF
SLALADAVMLSGLFYAAGGPPSGLGNLLIASVAISNVLLRGRMGLLIAAISASGIIYLTFYLSFSLPAAANYYVQAGLLG
VLCFAASFLVQGLTRLLNVSETLAEQRASDVTKLEELNALILQRMHTGILVLDAEHRVQLVNQSGLALLGQEHLLGRVID
PYSPELIARLRLWQSNPTLRPQSLKVEGSDVVLQPSFIALQRGEQRQTLIFLEDLSKIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELQGPDRRLTQIIQDQSKRMNLVIENVLQLSRRRQAEPQLLDLSPWLQAFVSDWRERAGPG
QQLHLRIENDWLKTHADPQQMTQVLNNLLENGLRYSAQLHDQAEVWLTLSRERRNDLPTLEVRDNGPGVAPEQLQHLFEP
FFTTESQGTGLGLYLSRELCESNQARLDYSRHEGGSCFRITFAHVLKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1106217 ACM62G_RS07540 WP_419736953.1 1627373..1628962(+) (pilS) [Pseudomonas sp. COR18]
GTGACCGCTGAGACCTTCGGTCTCGGCGGAGCCCAGGCGCAGCGCCTGCTCAGGCTCTACAACCTCTACCGCCTGAGCAT
CGGCATCGCCCTGGTCCTGCTGATTTCCAGCAGGATGGACGACAAGCTGCTGGAACTGACCGACGGCGAACTGTTTCGCA
CCGGCAGTTGGATCTACCTGATCCTGAACATCCTGGTGGTGGTGCTGCTGGAAAACCCCAGGCGCCAGGCCCAGGTCTTC
AGCCTGGCACTGGCCGACGCGGTGATGCTGTCGGGCCTGTTCTATGCCGCAGGTGGCCCGCCGAGTGGTCTGGGCAACCT
GCTGATCGCCTCGGTCGCCATCAGCAACGTGCTGCTGCGCGGCCGCATGGGGTTGCTGATCGCGGCCATTTCAGCCAGCG
GCATCATCTACCTGACCTTCTACCTGAGCTTCAGCCTCCCGGCGGCGGCCAACTACTATGTGCAGGCCGGGCTGCTGGGC
GTGCTGTGCTTCGCCGCGTCCTTCCTCGTCCAGGGGCTGACCCGCCTGCTGAACGTCAGCGAAACCCTGGCCGAACAACG
TGCCAGCGACGTGACCAAGCTCGAAGAGCTCAACGCCCTGATCCTGCAACGCATGCACACCGGCATCCTGGTGCTCGACG
CCGAACATCGCGTGCAACTGGTCAACCAGAGTGGGCTCGCGCTGCTGGGCCAGGAGCATCTGCTCGGGCGAGTGATCGAC
CCCTACTCGCCGGAGCTGATCGCCCGCCTGCGCCTGTGGCAAAGCAACCCGACATTGCGCCCGCAAAGCCTCAAGGTCGA
GGGCAGTGACGTGGTCCTGCAGCCCAGCTTCATCGCCCTGCAGCGGGGCGAGCAGCGCCAGACGCTGATCTTCCTCGAAG
ACCTGTCGAAAATCGCCCAACAGGCCCAACAGCTCAAACTTGCCGCCTTGGGCCGACTGACCGCCGGGATCGCCCACGAA
ATCCGCAACCCCCTGGGCGCCATCAGCCACGCGGCCCAGTTGCTGCAGGAATCGGAGGAACTGCAAGGTCCCGACCGGCG
TCTCACGCAAATAATCCAGGACCAGTCCAAGCGCATGAATCTGGTGATCGAGAACGTCCTGCAACTGTCGCGGCGACGCC
AGGCCGAGCCACAATTGCTCGACCTGAGCCCCTGGCTGCAGGCCTTTGTCAGCGACTGGCGCGAAAGAGCCGGCCCGGGC
CAGCAACTGCACCTGCGGATCGAGAACGATTGGCTGAAGACCCACGCCGACCCGCAGCAAATGACCCAGGTGCTGAACAA
TCTGCTGGAGAACGGCCTGCGCTACAGCGCCCAGTTGCATGACCAGGCCGAAGTCTGGCTGACCCTGTCGCGCGAGCGCA
GGAACGATCTGCCGACGCTCGAGGTCCGCGACAACGGCCCCGGTGTCGCTCCGGAGCAGTTGCAGCACCTGTTCGAACCC
TTCTTCACCACCGAAAGCCAGGGCACGGGCCTGGGCCTGTACCTGTCCCGCGAGTTATGCGAAAGCAACCAGGCCCGCCT
AGACTATTCAAGGCACGAAGGCGGCAGTTGCTTTCGCATCACCTTCGCACACGTACTTAAACAGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.075

100

0.622

Multiple sequence alignment