Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACM595_RS10125 Genome accession   NZ_CP183796
Coordinates   2064131..2064643 (+) Length   170 a.a.
NCBI ID   WP_002484307.1    Uniprot ID   -
Organism   Staphylococcus sp. LKG3-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2059131..2069643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM595_RS10100 (ACM595_10100) - 2060198..2061076 (+) 879 WP_419744290.1 mechanosensitive ion channel family protein -
  ACM595_RS10105 (ACM595_10105) - 2061105..2061320 (+) 216 WP_002484311.1 DUF951 domain-containing protein -
  ACM595_RS10110 (ACM595_10110) ychF 2061320..2062417 (+) 1098 WP_002484310.1 redox-regulated ATPase YchF -
  ACM595_RS10115 (ACM595_10115) - 2062579..2063385 (-) 807 WP_075340102.1 GH25 family lysozyme -
  ACM595_RS10120 (ACM595_10120) rpsF 2063807..2064112 (+) 306 WP_002484308.1 30S ribosomal protein S6 -
  ACM595_RS10125 (ACM595_10125) ssbA 2064131..2064643 (+) 513 WP_002484307.1 single-stranded DNA-binding protein Machinery gene
  ACM595_RS10130 (ACM595_10130) rpsR 2064693..2064935 (+) 243 WP_002484306.1 30S ribosomal protein S18 -
  ACM595_RS10135 (ACM595_10135) - 2065057..2065197 (-) 141 WP_164971920.1 hypothetical protein -
  ACM595_RS10140 (ACM595_10140) - 2065212..2065433 (-) 222 WP_011303964.1 hypothetical protein -
  ACM595_RS10145 (ACM595_10145) - 2065458..2065664 (-) 207 WP_037539156.1 hypothetical protein -
  ACM595_RS10150 (ACM595_10150) - 2065846..2066061 (-) 216 WP_037539155.1 hypothetical protein -
  ACM595_RS10155 (ACM595_10155) - 2066485..2066757 (+) 273 WP_037539154.1 hypothetical protein -
  ACM595_RS10160 (ACM595_10160) - 2066820..2066972 (+) 153 WP_002484305.1 hypothetical protein -
  ACM595_RS10165 (ACM595_10165) - 2067314..2067421 (-) 108 Protein_1972 replication protein -
  ACM595_RS10170 (ACM595_10170) - 2067880..2068635 (+) 756 Protein_1973 DUF536 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18948.48 Da        Isoelectric Point: 4.9163

>NTDB_id=1106131 ACM595_RS10125 WP_002484307.1 2064131..2064643(+) (ssbA) [Staphylococcus sp. LKG3-1]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNNFQNFGGQQSGQNTSSYQSNNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1106131 ACM595_RS10125 WP_002484307.1 2064131..2064643(+) (ssbA) [Staphylococcus sp. LKG3-1]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAACAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACAT
CATCTTATCAAAGTAATAACAACAATAATTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.953

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

57.225

100

0.582
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.706

0.382

Multiple sequence alignment