Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACM595_RS01675 Genome accession   NZ_CP183796
Coordinates   343398..344273 (+) Length   291 a.a.
NCBI ID   WP_041080447.1    Uniprot ID   -
Organism   Staphylococcus sp. LKG3-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 338398..349273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM595_RS01655 (ACM595_01655) ylqF 339252..340112 (+) 861 WP_037538552.1 ribosome biogenesis GTPase YlqF -
  ACM595_RS01660 (ACM595_01660) - 340119..340889 (+) 771 WP_041080446.1 ribonuclease HII -
  ACM595_RS01665 (ACM595_01665) sucC 340997..342163 (+) 1167 WP_002483476.1 ADP-forming succinate--CoA ligase subunit beta -
  ACM595_RS01670 (ACM595_01670) sucD 342185..343090 (+) 906 WP_002483475.1 succinate--CoA ligase subunit alpha -
  ACM595_RS01675 (ACM595_01675) dprA 343398..344273 (+) 876 WP_041080447.1 DNA-processing protein DprA Machinery gene
  ACM595_RS01680 (ACM595_01680) topA 344479..346545 (+) 2067 WP_002483473.1 type I DNA topoisomerase -
  ACM595_RS01685 (ACM595_01685) trmFO 346700..348007 (+) 1308 WP_041080450.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACM595_RS01690 (ACM595_01690) xerC 348126..349016 (+) 891 WP_037538546.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33758.46 Da        Isoelectric Point: 10.3610

>NTDB_id=1106104 ACM595_RS01675 WP_041080447.1 343398..344273(+) (dprA) [Staphylococcus sp. LKG3-1]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTTNFEILFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1106104 ACM595_RS01675 WP_041080447.1 343398..344273(+) (dprA) [Staphylococcus sp. LKG3-1]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTTGAAATACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTCACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGCACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGTGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

50.338

100

0.512
  dprA Staphylococcus aureus MW2

50.338

100

0.512
  dprA Lactococcus lactis subsp. cremoris KW2

38.966

99.656

0.388
  dprA Vibrio campbellii strain DS40M4

36.949

100

0.375

Multiple sequence alignment