Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACN3VN_RS10830 Genome accession   NZ_CP183396
Coordinates   2348676..2350088 (-) Length   470 a.a.
NCBI ID   WP_058569269.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8074     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2343676..2355088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3VN_RS10805 (ACN3VN_10805) - 2343817..2344266 (+) 450 WP_058569266.1 pilin -
  ACN3VN_RS10810 (ACN3VN_10810) - 2344531..2344734 (-) 204 WP_419653900.1 hypothetical protein -
  ACN3VN_RS10815 (ACN3VN_10815) - 2345239..2345367 (-) 129 WP_267885865.1 hypothetical protein -
  ACN3VN_RS10820 (ACN3VN_10820) - 2345568..2346008 (+) 441 WP_058569267.1 pilin -
  ACN3VN_RS10825 (ACN3VN_10825) pilB 2346849..2348582 (+) 1734 WP_058569268.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACN3VN_RS10830 (ACN3VN_10830) pilR 2348676..2350088 (-) 1413 WP_058569269.1 sigma-54-dependent transcriptional regulator Regulator
  ACN3VN_RS10835 (ACN3VN_10835) - 2350274..2351884 (-) 1611 WP_058569270.1 sensor histidine kinase -
  ACN3VN_RS10840 (ACN3VN_10840) sucC 2352133..2353296 (+) 1164 WP_046418841.1 ADP-forming succinate--CoA ligase subunit beta -
  ACN3VN_RS10845 (ACN3VN_10845) sucD 2353325..2354197 (+) 873 WP_046418458.1 succinate--CoA ligase subunit alpha -
  ACN3VN_RS10850 (ACN3VN_10850) - 2354649..2354903 (-) 255 WP_140190032.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51285.13 Da        Isoelectric Point: 7.2158

>NTDB_id=1105524 ACN3VN_RS10830 WP_058569269.1 2348676..2350088(-) (pilR) [Xylella fastidiosa strain CFBP8074]
MNQSRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVNKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERVGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALEHYSFPGNVRELENILERALALTEDDHIGAADLHLPQGSLHGQGLPLPLVP
TALPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=1105524 ACN3VN_RS10830 WP_058569269.1 2348676..2350088(-) (pilR) [Xylella fastidiosa strain CFBP8074]
ATGAATCAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAACAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAATGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGTT
TCCGTCACGACTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGTTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCACACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGAACATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGCCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGCTCTCCCGATTGTGCCTGTGGACGCATCAGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTACCGTCGTATAT
GGAGCAGTTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCATTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.422

99.787

0.583
  pilR Acinetobacter baumannii strain A118

47.158

100

0.477

Multiple sequence alignment