Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACN2AV_RS11090 | Genome accession | NZ_CP183391 |
| Coordinates | 2279381..2279947 (+) | Length | 188 a.a. |
| NCBI ID | WP_013726868.1 | Uniprot ID | - |
| Organism | Lentilactobacillus buchneri subsp. silagei strain AGA55 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2274381..2284947
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN2AV_RS11070 (ACN2AV_11070) | gyrA | 2274389..2276956 (+) | 2568 | WP_419713160.1 | DNA gyrase subunit A | - |
| ACN2AV_RS11075 (ACN2AV_11075) | - | 2277142..2278251 (+) | 1110 | WP_419713161.1 | lactate oxidase | - |
| ACN2AV_RS11080 (ACN2AV_11080) | - | 2278457..2278648 (-) | 192 | WP_013726866.1 | hypothetical protein | - |
| ACN2AV_RS11085 (ACN2AV_11085) | rpsF | 2279050..2279346 (+) | 297 | WP_013726867.1 | 30S ribosomal protein S6 | - |
| ACN2AV_RS11090 (ACN2AV_11090) | ssb | 2279381..2279947 (+) | 567 | WP_013726868.1 | single-stranded DNA-binding protein | Machinery gene |
| ACN2AV_RS11095 (ACN2AV_11095) | rpsR | 2279984..2280223 (+) | 240 | WP_013726869.1 | 30S ribosomal protein S18 | - |
| ACN2AV_RS11100 (ACN2AV_11100) | nhaC | 2280325..2281740 (-) | 1416 | WP_013726870.1 | Na+/H+ antiporter NhaC | - |
| ACN2AV_RS11105 (ACN2AV_11105) | - | 2282371..2283762 (+) | 1392 | WP_013726871.1 | amino acid permease | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20304.58 Da Isoelectric Point: 4.7146
>NTDB_id=1105508 ACN2AV_RS11090 WP_013726868.1 2279381..2279947(+) (ssb) [Lentilactobacillus buchneri subsp. silagei strain AGA55]
MLNRAVLTGRLTRDVDLRYTQSGTAVGSFSLAVDRQFTNQQGEREADFINCVIWRKSAENFANFVHKGSLVGIDGRIQTR
NYENAQGQRVYVTEVVVENFALLEPRSARNNSNGQQNGNAPQQNNGNANPFDNHSNAGTGNSGNSNNNGGNNPTNNGGNN
GNNGNNNPNDPFANSGDSIDISDDDLPF
MLNRAVLTGRLTRDVDLRYTQSGTAVGSFSLAVDRQFTNQQGEREADFINCVIWRKSAENFANFVHKGSLVGIDGRIQTR
NYENAQGQRVYVTEVVVENFALLEPRSARNNSNGQQNGNAPQQNNGNANPFDNHSNAGTGNSGNSNNNGGNNPTNNGGNN
GNNGNNNPNDPFANSGDSIDISDDDLPF
Nucleotide
Download Length: 567 bp
>NTDB_id=1105508 ACN2AV_RS11090 WP_013726868.1 2279381..2279947(+) (ssb) [Lentilactobacillus buchneri subsp. silagei strain AGA55]
ATGCTTAATCGTGCAGTTCTTACGGGTCGCCTAACCCGCGATGTTGATTTACGATACACTCAAAGCGGAACCGCTGTCGG
TTCGTTCTCACTTGCCGTTGATCGGCAATTTACCAATCAACAGGGGGAACGAGAGGCTGATTTCATTAACTGCGTAATCT
GGCGTAAATCCGCTGAAAACTTTGCCAACTTCGTTCATAAGGGGTCGCTTGTTGGAATTGATGGCCGTATTCAGACCAGA
AATTACGAAAACGCACAGGGACAACGTGTTTATGTGACCGAAGTTGTAGTAGAGAATTTTGCGCTGCTTGAGCCCCGTTC
TGCAAGGAACAACTCAAATGGTCAGCAAAATGGCAATGCTCCTCAACAAAATAACGGTAATGCCAATCCATTTGATAATC
ATTCAAATGCCGGTACCGGAAATAGTGGCAATTCCAACAATAACGGCGGGAATAATCCGACTAACAATGGTGGAAATAAC
GGTAATAACGGGAACAATAATCCCAATGATCCGTTCGCTAACTCTGGGGACTCGATTGACATTTCCGATGATGATTTACC
ATTCTAA
ATGCTTAATCGTGCAGTTCTTACGGGTCGCCTAACCCGCGATGTTGATTTACGATACACTCAAAGCGGAACCGCTGTCGG
TTCGTTCTCACTTGCCGTTGATCGGCAATTTACCAATCAACAGGGGGAACGAGAGGCTGATTTCATTAACTGCGTAATCT
GGCGTAAATCCGCTGAAAACTTTGCCAACTTCGTTCATAAGGGGTCGCTTGTTGGAATTGATGGCCGTATTCAGACCAGA
AATTACGAAAACGCACAGGGACAACGTGTTTATGTGACCGAAGTTGTAGTAGAGAATTTTGCGCTGCTTGAGCCCCGTTC
TGCAAGGAACAACTCAAATGGTCAGCAAAATGGCAATGCTCCTCAACAAAATAACGGTAATGCCAATCCATTTGATAATC
ATTCAAATGCCGGTACCGGAAATAGTGGCAATTCCAACAATAACGGCGGGAATAATCCGACTAACAATGGTGGAAATAAC
GGTAATAACGGGAACAATAATCCCAATGATCCGTTCGCTAACTCTGGGGACTCGATTGACATTTCCGATGATGATTTACC
ATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.905 |
100 |
0.622 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.886 |
100 |
0.553 |